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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036366 through 18771 annotations produced 1 hits



(CG10133):

Annotation Number : CG10133
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036366
Gbrowse : chr3L:13442286-13443463 (-) // 100.0 //
Probeset : 1624289_at
Accessions : protein= NP_648651;, nucleotide= NM_140394;
Interpro : 0004623 // phospholipase A2 activity // inferred from sequence or structural similarity /// 0004623 // phospholipase A2
FlyMine data for FBgn0036366.
BDGP gene expression has embryonic in situ data for CG10133: 4 pix of staining in 1 body parts.
BioGrid reports that CG10133 interacts with CG7524 .
TRiP has 1 RNAi stocks for FBgn0036366 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036366 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain48 ± 24 of 4 0.60Down
Head27 ± 34 of 4 0.30Down
Eye33 ± 34 of 4 0.38Down
Thoracicoabdominal ganglion45 ± 24 of 4 0.50Down
Salivary gland21 ± 52 of 4 0.24Down
Crop25 ± 34 of 4 0.30Down
Midgut32 ± 34 of 4 0.40Down
Tubule53 ± 24 of 4 0.60Down
Hindgut34 ± 04 of 4 0.40Down
Heart26 ± 44 of 4 0.31Down
Fat body17 ± 44 of 4 0.20Down
Ovary193 ± 44 of 4 2.20Up
Testis57 ± 44 of 4 0.70Down
Male accessory glands61 ± 54 of 4 0.70Down
Virgin spermatheca19 ± 14 of 4 0.23Down
Mated spermatheca16 ± 14 of 4 0.19Down
Adult carcass20 ± 24 of 4 0.20Down
Larval CNS82 ± 74 of 4 0.95None
Larval Salivary gland73 ± 34 of 4 0.84None
Larval midgut30 ± 14 of 4 0.35Down
Larval tubule31 ± 24 of 4 0.40Down
Larval hindgut53 ± 14 of 4 0.62Down
Larval fat body24 ± 42 of 4 0.30Down
Larval trachea109 ± 124 of 4 1.26Up
Larval carcass50 ± 44 of 4 0.58Down
S2 cells (growing)66 ± 24 of 4 0.76Down
Whole fly87 ± 44 of 4

Looking for FBgn0036366. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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