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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036367 through 18771 annotations produced 1 hits



(CG10116):

Annotation Number : CG10116
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036367
Gbrowse : chr3L:13449305-13450338 (-) // 100.0 //
Probeset : 1630778_at
Accessions : protein= NP_648652;, nucleotide= NM_140395;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004465 // lipoprotein lipase activity // infer
FlyMine data for FBgn0036367.
Homophila reports that CG10116 is a close match (2e-13) to human gene HDLCQ12;HL;LIPC;LIPH (NP_000227), a gene associated with Hepatic lipase deficiency (3);[High density lipoprotein cholesterol level QTL 12] (3);{Diabetes mellitus, noninsulin-dependent}, 125853 (3).
VDRC has 2 RNAi stocks for FBgn0036367 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 32 of 4 0.10Down
Head13 ± 14 of 4 0.10Down
Eye7 ± 11 of 4 0.04Down
Thoracicoabdominal ganglion13 ± 14 of 4 0.10Down
Salivary gland20 ± 62 of 4 0.12Down
Crop11 ± 24 of 4 0.10Down
Midgut1688 ± 194 of 410.30Up
Tubule17 ± 62 of 4 0.10Down
Hindgut431 ± 284 of 4 2.60Up
Heart5 ± 02 of 4 0.04Down
Fat body11 ± 43 of 4 0.07Down
Ovary6 ± 02 of 4 0.00Down
Testis7 ± 22 of 4 0.00Down
Male accessory glands10 ± 10 of 4 0.10Down
Virgin spermatheca5 ± 00 of 4 0.04Down
Mated spermatheca6 ± 11 of 4 0.04Down
Adult carcass20 ± 23 of 4 0.10Down
Larval CNS6 ± 22 of 4 0.04Down
Larval Salivary gland5 ± 11 of 4 0.03Down
Larval midgut730 ± 274 of 4 4.47Up
Larval tubule13 ± 24 of 4 0.10Down
Larval hindgut130 ± 104 of 4 0.80None
Larval fat body15 ± 21 of 4 0.10Down
Larval trachea3 ± 20 of 4 0.02Down
Larval carcass9 ± 11 of 4 0.06Down
S2 cells (growing)6 ± 14 of 4 0.04Down
Whole fly163 ± 164 of 4

Looking for FBgn0036367. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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