Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036368 through 18771 annotations produced 2 hits



(CG10738):

Annotation Number : CG10738
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036368
Gbrowse : chr3L:13453362-13458118 (+) // 100.0 //
Probeset : 1631814_a_at
Accessions : protein= NP_648653; /// NP_729905;, nucleotide= NM_140396; /// NM_168547;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004383 // guanylate cyclase activity // inferr
FlyMine data for FBgn0036368.
Homophila reports that CG10738 is a close match (8e-12) to human gene FGFR1;FLT2;KAL2 (NP_056934), a gene associated with Jackson-Weiss syndrome, 123150 (3);Kallmann syndrome 2, 147950 (3);Pfeiffer syndrome, 101600 (3).
TRiP has 2 RNAi stocks for FBgn0036368 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain22 14 of 4 2.60Up
Head4 10 of 4 0.50None
Eye9 12 of 4 1.06None
Thoracicoabdominal ganglion17 33 of 4 2.00None
Salivary gland29 12 of 4 3.44Up
Crop3 10 of 4 0.40None
Midgut7 21 of 4 0.80None
Tubule6 00 of 4 0.80Down
Hindgut7 30 of 4 0.80None
Heart2 00 of 4 0.35None
Fat body7 40 of 4 0.82None
Ovary7 10 of 4 0.90None
Testis5 10 of 4 0.60None
Male accessory glands7 30 of 4 0.90None
Virgin spermatheca5 10 of 4 0.63None
Mated spermatheca5 10 of 4 0.58None
Adult carcass16 41 of 4 2.00None
Larval CNS16 34 of 4 1.90Up
Larval Salivary gland26 21 of 4 3.12Up
Larval midgut43 23 of 4 5.13Up
Larval tubule7 10 of 4 0.90None
Larval hindgut11 13 of 4 1.37None
Larval fat body4 10 of 4 0.60None
Larval trachea17 74 of 4 2.08None
Larval carcass9 10 of 4 1.14None
S2 cells (growing)2 10 of 4 0.31None
Whole fly8 20 of 4



(CG10738):

Annotation Number : CG10738
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036368
Gbrowse : chr3L:13453362-13458366 (+) // 100.0 //
Probeset : 1628582_at
Accessions : protein= NP_648653; /// NP_729905;, nucleotide= NM_140396; /// NM_168547;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004383 // guanylate cyclase activity // inferr
FlyMine data for FBgn0036368.
Homophila reports that CG10738 is a close match (8e-12) to human gene FGFR1;FLT2;KAL2 (NP_056934), a gene associated with Jackson-Weiss syndrome, 123150 (3);Kallmann syndrome 2, 147950 (3);Pfeiffer syndrome, 101600 (3).
TRiP has 2 RNAi stocks for FBgn0036368 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 21 of 4 3.30Up
Head8 10 of 4 1.40None
Eye2 10 of 4 0.40None
Thoracicoabdominal ganglion21 20 of 4 3.80Up
Salivary gland35 101 of 4 6.03None
Crop3 10 of 4 0.60None
Midgut8 20 of 4 1.40None
Tubule4 00 of 4 0.80None
Hindgut4 10 of 4 0.80None
Heart2 10 of 4 0.49None
Fat body4 50 of 4 0.81None
Ovary5 10 of 4 1.00None
Testis2 00 of 4 0.40None
Male accessory glands11 30 of 4 2.00None
Virgin spermatheca3 00 of 4 0.54None
Mated spermatheca3 10 of 4 0.64None
Adult carcass8 40 of 4 1.40None
Larval CNS19 02 of 4 3.33Up
Larval Salivary gland20 24 of 4 3.52Up
Larval midgut40 24 of 4 6.99Up
Larval tubule4 10 of 4 0.80None
Larval hindgut12 11 of 4 2.20Up
Larval fat body7 20 of 4 1.30None
Larval trachea20 113 of 4 3.44None
Larval carcass3 00 of 4 0.53None
S2 cells (growing)2 00 of 4 0.36None
Whole fly5 10 of 4

Looking for FBgn0036368. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime