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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036373 through 18771 annotations produced 1 hits


Annotation Number : CG10741
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036373
Gbrowse : chr3L:13479903-13495504 (+) // 100.0 //
Probeset : 1635755_a_at
Accessions : protein= NP_648658; /// NP_729916;, nucleotide= NM_140401; /// NM_168555;
FlyMine data for FBgn0036373.
BDGP gene expression has embryonic in situ data for CG10741: 11 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0036373 available for purchase.
VDRC has 1 RNAi stocks for FBgn0036373 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain87 34 of 4 1.40Up
Head48 44 of 4 0.80None
Eye42 24 of 4 0.70None
Thoracicoabdominal ganglion63 24 of 4 1.00None
Salivary gland71 74 of 4 1.17None
Crop44 14 of 4 0.70None
Midgut37 34 of 4 0.60None
Tubule23 14 of 4 0.40Down
Hindgut39 14 of 4 0.70None
Heart34 14 of 4 0.57Down
Fat body35 54 of 4 0.59Down
Ovary147 44 of 4 2.40Up
Testis42 24 of 4 0.70None
Male accessory glands63 54 of 4 1.00None
Virgin spermatheca32 34 of 4 0.53Down
Mated spermatheca33 14 of 4 0.56Down
Adult carcass47 54 of 4 0.80None
Larval CNS92 84 of 4 1.52Up
Larval Salivary gland91 64 of 4 1.51Up
Larval midgut44 54 of 4 0.73None
Larval tubule44 34 of 4 0.70None
Larval hindgut77 44 of 4 1.28None
Larval fat body72 124 of 4 1.20None
Larval trachea113 64 of 4 1.87Up
Larval carcass88 44 of 4 1.46Up
S2 cells (growing)219 54 of 4 3.63Up
Whole fly60 74 of 4

Looking for FBgn0036373. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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