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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036374 through 18771 annotations produced 1 hits



(Spt20):

Annotation Number : CG17689
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036374
Gbrowse : chr3L:13495839-13502898 (+) // 100.0 //
Probeset : 1637009_at
Accessions : protein= NP_001034005; /// NP_648659;, nucleotide= NM_001038916; /// NM_140402;
Pathway : 0070461 // SAGA-type complex // inferred from direct assay
FlyMine data for FBgn0036374.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 10 of 4 1.10None
Head7 20 of 4 0.70None
Eye10 13 of 4 0.85None
Thoracicoabdominal ganglion11 30 of 4 1.00None
Salivary gland31 70 of 4 2.65None
Crop13 10 of 4 1.10None
Midgut8 20 of 4 0.70None
Tubule5 10 of 4 0.40Down
Hindgut8 10 of 4 0.70None
Heart8 20 of 4 0.73None
Fat body12 70 of 4 1.04None
Ovary42 04 of 4 3.60Up
Testis16 10 of 4 1.40None
Male accessory glands10 20 of 4 0.90None
Virgin spermatheca5 20 of 4 0.48None
Mated spermatheca4 10 of 4 0.35Down
Adult carcass16 40 of 4 1.40None
Larval CNS14 21 of 4 1.21None
Larval Salivary gland20 10 of 4 1.77Up
Larval midgut9 20 of 4 0.78None
Larval tubule11 32 of 4 1.00None
Larval hindgut9 11 of 4 0.81None
Larval fat body27 21 of 4 2.30Up
Larval trachea17 03 of 4 1.49None
Larval carcass15 10 of 4 1.29None
S2 cells (growing)31 14 of 4 2.66Up
Whole fly11 20 of 4

Looking for FBgn0036374. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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