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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036380 through 18771 annotations produced 1 hits



chr3L:13834373-13835340 (-) // 100.0 // ():

Annotation Number : CG8757
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1625156_at
Accessions : protein= , nucleotide= NP_648664;
Pathway : 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 1.40None
Head21 13 of 412.00Up
Eye108 114 of 461.03Up
Thoracicoabdominal ganglion2 10 of 4 1.40None
Salivary gland7 30 of 4 3.97None
Crop3 10 of 4 2.10None
Midgut4 10 of 4 2.80None
Tubule2 00 of 4 1.60None
Hindgut1 00 of 4 0.80None
Heart1 00 of 4 1.06None
Fat body4 30 of 4 2.54None
Ovary1 00 of 4 1.00None
Testis3 00 of 4 1.80None
Male accessory glands3 10 of 4 1.70None
Virgin spermatheca1 00 of 4 0.94None
Mated spermatheca2 10 of 4 1.41None
Adult carcass6 30 of 4 3.50None
Larval CNS3 10 of 4 1.99None
Larval Salivary gland6 10 of 4 3.45Up
Larval midgut8 20 of 4 4.65None
Larval tubule2 00 of 4 1.30None
Larval hindgut4 00 of 4 2.30None
Larval fat body3 10 of 4 2.00None
Larval trachea7 51 of 4 3.97None
Larval carcass3 00 of 4 1.80None
S2 cells (growing)1 00 of 4 0.76None
Whole fly1 00 of 4

Looking for FBgn0036380. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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