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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036382 through 18771 annotations produced 2 hits



(CG13737):

Annotation Number : CG13737
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036382
Gbrowse : chr3L:13872095-13876136 (+) // 100.0 //
Probeset : 1634287_at
Accessions : protein= NP_648666; /// NP_729931;, nucleotide= NM_140409; /// NM_168562;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036382.
BDGP gene expression has embryonic in situ data for CG13737: 4 pix of staining in 1 body parts.
BioGrid reports that CG13737 interacts with CG4276 CG2910 CG7399 .
VDRC has 3 RNAi stocks for FBgn0036382 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 ± 24 of 4 0.70None
Head10 ± 14 of 4 0.60None
Eye41 ± 14 of 4 2.36Up
Thoracicoabdominal ganglion44 ± 24 of 4 2.50Up
Salivary gland5 ± 20 of 4 0.33Down
Crop2 ± 10 of 4 0.20Down
Midgut2 ± 10 of 4 0.10Down
Tubule1 ± 00 of 4 0.10Down
Hindgut79 ± 34 of 4 4.40Up
Heart2 ± 10 of 4 0.14Down
Fat body3 ± 20 of 4 0.19Down
Ovary36 ± 64 of 4 2.10Up
Testis9 ± 14 of 4 0.50None
Male accessory glands4 ± 10 of 4 0.30Down
Virgin spermatheca4 ± 10 of 4 0.27Down
Mated spermatheca5 ± 10 of 4 0.30Down
Adult carcass3 ± 10 of 4 0.20Down
Larval CNS2 ± 10 of 4 0.12Down
Larval Salivary gland12 ± 13 of 4 0.71None
Larval midgut1 ± 00 of 4 0.09Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut49 ± 104 of 4 2.78None
Larval fat body7 ± 01 of 4 0.40None
Larval trachea7 ± 10 of 4 0.40None
Larval carcass8 ± 21 of 4 0.49None
S2 cells (growing)1 ± 00 of 4 0.10Down
Whole fly17 ± 34 of 4



(CG13737):

Annotation Number : CG13737
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036382
Gbrowse : chr3L:13872095-13876136 (+) // 100.0 //
Probeset : 1636750_s_at
Accessions : protein= NP_648666; /// NP_729931;, nucleotide= NM_140409; /// NM_168562;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036382.
BDGP gene expression has embryonic in situ data for CG13737: 4 pix of staining in 1 body parts.
BioGrid reports that CG13737 interacts with CG4276 CG2910 CG7399 .
VDRC has 3 RNAi stocks for FBgn0036382 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 ± 14 of 4 0.60None
Head34 ± 24 of 4 0.90None
Eye86 ± 44 of 4 2.33Up
Thoracicoabdominal ganglion113 ± 84 of 4 3.10Up
Salivary gland19 ± 30 of 4 0.53None
Crop8 ± 10 of 4 0.20Down
Midgut9 ± 30 of 4 0.30Down
Tubule7 ± 10 of 4 0.20Down
Hindgut141 ± 134 of 4 3.80Up
Heart8 ± 13 of 4 0.23Down
Fat body15 ± 32 of 4 0.41Down
Ovary65 ± 84 of 4 1.80Up
Testis7 ± 00 of 4 0.20Down
Male accessory glands11 ± 31 of 4 0.30Down
Virgin spermatheca45 ± 14 of 4 1.22None
Mated spermatheca49 ± 94 of 4 1.32None
Adult carcass20 ± 12 of 4 0.60None
Larval CNS8 ± 11 of 4 0.23Down
Larval Salivary gland30 ± 14 of 4 0.81None
Larval midgut9 ± 20 of 4 0.25Down
Larval tubule5 ± 10 of 4 0.20Down
Larval hindgut80 ± 94 of 4 2.17Up
Larval fat body16 ± 32 of 4 0.40Down
Larval trachea12 ± 53 of 4 0.34Down
Larval carcass31 ± 24 of 4 0.85None
S2 cells (growing)8 ± 00 of 4 0.22Down
Whole fly37 ± 64 of 4

Looking for FBgn0036382. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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