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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036389 through 18771 annotations produced 3 hits



():

Annotation Number : CG9028
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr3L:13958304-13959026 (+) // 100.0 //
Probeset : 1641155_at
Accessions : protein= NP_648672;, nucleotide= NM_140415;


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 1.70Up
Head0 00 of 4 0.80None
Eye0 00 of 4 1.29None
Thoracicoabdominal ganglion1 00 of 4 1.80None
Salivary gland2 10 of 4 4.86None
Crop2 00 of 4 5.30None
Midgut1 00 of 4 1.80None
Tubule2 00 of 4 4.50Up
Hindgut1 00 of 4 3.50None
Heart3 11 of 4 6.00None
Fat body2 20 of 4 3.81None
Ovary4 10 of 4 8.20None
Testis2 00 of 4 3.80None
Male accessory glands2 10 of 4 5.10None
Virgin spermatheca2 10 of 4 4.05None
Mated spermatheca1 00 of 4 3.38None
Adult carcass0 00 of 4 1.70None
Larval CNS0 00 of 4 0.81None
Larval Salivary gland1 00 of 4 2.52None
Larval midgut0 00 of 4 1.24None
Larval tubule1 00 of 4 2.60None
Larval hindgut1 00 of 4 2.10None
Larval fat body3 10 of 4 7.50None
Larval trachea3 20 of 4 6.76None
Larval carcass0 00 of 4 0.81Down
S2 cells (growing)2 10 of 4 4.33None
Whole fly0 00 of 4



CG9028 (ssp2):

Annotation Number : CG9028
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036389
Gbrowse : chr3L:13958304-13959026 (+) // 100.0 //
Probeset : 1634047_a_at
Accessions : protein= NP_648672;, nucleotide= NM_140415;
FlyMine data for FBgn0036389.
BDGP gene expression has embryonic in situ data for CG9028: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0036389 available for purchase.
VDRC has 4 RNAi stocks for FBgn0036389 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 14 of 4 0.60None
Head7 22 of 4 0.50None
Eye4 21 of 4 0.29None
Thoracicoabdominal ganglion4 21 of 4 0.30None
Salivary gland9 30 of 4 0.61None
Crop22 54 of 4 1.50None
Midgut5 10 of 4 0.40None
Tubule1 00 of 4 0.10Down
Hindgut7 04 of 4 0.50None
Heart5 02 of 4 0.38None
Fat body5 11 of 4 0.36None
Ovary35 24 of 4 2.40Up
Testis2 10 of 4 0.20None
Male accessory glands9 23 of 4 0.60None
Virgin spermatheca3 10 of 4 0.21None
Mated spermatheca3 00 of 4 0.21None
Adult carcass8 21 of 4 0.60None
Larval CNS4 03 of 4 0.29None
Larval Salivary gland4 02 of 4 0.33None
Larval midgut4 10 of 4 0.31None
Larval tubule8 13 of 4 0.60None
Larval hindgut4 03 of 4 0.33None
Larval fat body7 22 of 4 0.50None
Larval trachea6 14 of 4 0.47None
Larval carcass2 00 of 4 0.14Down
S2 cells (growing)70 54 of 4 4.75Up
Whole fly14 43 of 4



CG9028 (ssp2):

Annotation Number : CG9028
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036389
Gbrowse : chr3L:13958328-13965120 (+) // 100.0 //
Probeset : 1632670_at
Accessions : protein= NP_648672;, nucleotide= NM_140415;
FlyMine data for FBgn0036389.
BDGP gene expression has embryonic in situ data for CG9028: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0036389 available for purchase.
VDRC has 4 RNAi stocks for FBgn0036389 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain159 44 of 4 0.80None
Head93 54 of 4 0.50Down
Eye84 64 of 4 0.43Down
Thoracicoabdominal ganglion191 134 of 4 1.00None
Salivary gland93 174 of 4 0.48Down
Crop198 74 of 4 1.00None
Midgut63 34 of 4 0.30Down
Tubule44 14 of 4 0.20Down
Hindgut88 44 of 4 0.50Down
Heart54 64 of 4 0.28Down
Fat body68 54 of 4 0.34Down
Ovary432 64 of 4 2.20Up
Testis37 04 of 4 0.20Down
Male accessory glands94 84 of 4 0.50Down
Virgin spermatheca34 24 of 4 0.17Down
Mated spermatheca37 54 of 4 0.19Down
Adult carcass115 24 of 4 0.60Down
Larval CNS134 94 of 4 0.68Down
Larval Salivary gland102 84 of 4 0.52Down
Larval midgut53 33 of 4 0.27Down
Larval tubule88 24 of 4 0.40Down
Larval hindgut89 24 of 4 0.45Down
Larval fat body73 74 of 4 0.40Down
Larval trachea94 44 of 4 0.48Down
Larval carcass97 84 of 4 0.49Down
S2 cells (growing)370 74 of 4 1.88Up
Whole fly197 124 of 4

Looking for FBgn0036389. 3 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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