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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036391 through 18771 annotations produced 3 hits



(CG17364):

Annotation Number : CG17364
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036391
Gbrowse : chr3L:13972136-13978608 (-) // 100.0 //
Probeset : 1628021_at
Accessions : protein= NP_648674; /// NP_788506;, nucleotide= NM_140417; /// NM_176328;
Pathway : 0005874 // microtubule // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic
FlyMine data for FBgn0036391.
BDGP gene expression has embryonic in situ data for CG17364: 4 pix of staining in 1 body parts.
BioGrid reports that CG17364 interacts with CG8191 .
VDRC has 1 RNAi stocks for FBgn0036391 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain51 ± 14 of 410.40Up
Head7 ± 10 of 4 1.60None
Eye6 ± 11 of 4 1.32None
Thoracicoabdominal ganglion38 ± 74 of 4 7.80Up
Salivary gland7 ± 20 of 4 1.57None
Crop1 ± 00 of 4 0.30None
Midgut4 ± 10 of 4 0.90None
Tubule4 ± 00 of 4 0.90None
Hindgut5 ± 10 of 4 1.20None
Heart3 ± 10 of 4 0.66None
Fat body1 ± 00 of 4 0.21None
Ovary3 ± 00 of 4 0.60None
Testis10 ± 01 of 4 2.20Up
Male accessory glands4 ± 00 of 4 0.90None
Virgin spermatheca4 ± 10 of 4 0.92None
Mated spermatheca4 ± 00 of 4 0.95None
Adult carcass6 ± 10 of 4 1.40None
Larval CNS9 ± 32 of 4 1.95None
Larval Salivary gland26 ± 13 of 4 5.40Up
Larval midgut8 ± 20 of 4 1.68None
Larval tubule1 ± 00 of 4 0.40None
Larval hindgut5 ± 10 of 4 1.16None
Larval fat body4 ± 10 of 4 0.90None
Larval trachea3 ± 30 of 4 0.78None
Larval carcass5 ± 00 of 4 1.09None
S2 cells (growing)2 ± 10 of 4 0.52None
Whole fly4 ± 10 of 4



(CG17364):

Annotation Number : CG17364
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036391
Gbrowse : chr3L:13972136-13978608 (-) // 100.0 //
Probeset : 1635798_a_at
Accessions : protein= NP_648674; /// NP_788506;, nucleotide= NM_140417; /// NM_176328;
Pathway : 0005874 // microtubule // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic
FlyMine data for FBgn0036391.
BDGP gene expression has embryonic in situ data for CG17364: 4 pix of staining in 1 body parts.
BioGrid reports that CG17364 interacts with CG8191 .
VDRC has 1 RNAi stocks for FBgn0036391 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 ± 14 of 4 1.40None
Head12 ± 14 of 4 1.50None
Eye11 ± 13 of 4 1.34None
Thoracicoabdominal ganglion15 ± 23 of 4 1.80None
Salivary gland119 ± 94 of 413.94Up
Crop10 ± 22 of 4 1.20None
Midgut13 ± 11 of 4 1.60Up
Tubule7 ± 10 of 4 0.90None
Hindgut11 ± 21 of 4 1.30None
Heart8 ± 02 of 4 0.97None
Fat body7 ± 33 of 4 0.90None
Ovary3 ± 00 of 4 0.40Down
Testis4 ± 10 of 4 0.50Down
Male accessory glands14 ± 21 of 4 1.70None
Virgin spermatheca8 ± 13 of 4 0.98None
Mated spermatheca7 ± 12 of 4 0.82None
Adult carcass42 ± 54 of 4 4.90Up
Larval CNS6 ± 23 of 4 0.79None
Larval Salivary gland26 ± 54 of 4 3.13Up
Larval midgut5 ± 10 of 4 0.65None
Larval tubule8 ± 10 of 4 1.00None
Larval hindgut6 ± 13 of 4 0.77None
Larval fat body8 ± 20 of 4 1.00None
Larval trachea6 ± 21 of 4 0.80None
Larval carcass7 ± 03 of 4 0.89None
S2 cells (growing)4 ± 10 of 4 0.57None
Whole fly8 ± 03 of 4



(CG17364):

Annotation Number : CG17364
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036391
Gbrowse : chr3L:13974195-13978608 (-) // 100.0 //
Probeset : 1636833_at
Accessions : protein= NP_648674; /// NP_788506;, nucleotide= NM_140417; /// NM_176328;
Pathway : 0005874 // microtubule // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic
FlyMine data for FBgn0036391.
BDGP gene expression has embryonic in situ data for CG17364: 4 pix of staining in 1 body parts.
BioGrid reports that CG17364 interacts with CG8191 .
VDRC has 1 RNAi stocks for FBgn0036391 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 03 of 4 1.30None
Head7 ± 04 of 4 1.60Up
Eye4 ± 00 of 4 0.89None
Thoracicoabdominal ganglion4 ± 11 of 4 0.90None
Salivary gland4 ± 10 of 4 0.82None
Crop2 ± 10 of 4 0.50None
Midgut4 ± 12 of 4 0.90None
Tubule4 ± 01 of 4 1.00None
Hindgut1 ± 00 of 4 0.20Down
Heart4 ± 02 of 4 1.01None
Fat body4 ± 11 of 4 0.99None
Ovary3 ± 02 of 4 0.60None
Testis2 ± 00 of 4 0.50Down
Male accessory glands3 ± 21 of 4 0.70None
Virgin spermatheca1 ± 01 of 4 0.32Down
Mated spermatheca1 ± 01 of 4 0.35Down
Adult carcass17 ± 23 of 4 3.70Up
Larval CNS3 ± 03 of 4 0.73None
Larval Salivary gland11 ± 14 of 4 2.35Up
Larval midgut2 ± 00 of 4 0.49Down
Larval tubule5 ± 12 of 4 1.10None
Larval hindgut3 ± 12 of 4 0.69None
Larval fat body2 ± 10 of 4 0.60None
Larval trachea4 ± 12 of 4 1.01None
Larval carcass3 ± 02 of 4 0.78None
S2 cells (growing)2 ± 02 of 4 0.43Down
Whole fly4 ± 02 of 4

Looking for FBgn0036391. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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