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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036394 through 18771 annotations produced 1 hits



/// (CG17362 /// CG9040):

Annotation Number : CG9040
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036394
Gbrowse : chr3L:13980998-13981726 (+) // 100.0 //
Probeset : 1627903_at
Accessions : protein= NP_648676; /// NP_648677;, nucleotide= NM_140419; /// NM_140420;
FlyMine data for FBgn0036394.
BioGrid reports that CG9040 interacts with CG9894 .
VDRC has 2 RNAi stocks for FBgn0036394 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 1.20None
Head3 10 of 4 1.20None
Eye4 10 of 4 1.47None
Thoracicoabdominal ganglion5 20 of 4 1.60None
Salivary gland9 20 of 4 2.84None
Crop8 12 of 4 2.50Up
Midgut6 20 of 4 2.00None
Tubule5 00 of 4 1.60Up
Hindgut5 00 of 4 1.50None
Heart7 10 of 4 2.14None
Fat body3 20 of 4 0.99None
Ovary3 01 of 4 1.10None
Testis2 00 of 4 0.70None
Male accessory glands4 10 of 4 1.20None
Virgin spermatheca6 11 of 4 1.86None
Mated spermatheca3 10 of 4 1.17None
Adult carcass10 20 of 4 3.30None
Larval CNS4 30 of 4 1.29None
Larval Salivary gland9153 2514 of 42752.91Up
Larval midgut7 10 of 4 2.37None
Larval tubule4 01 of 4 1.30None
Larval hindgut3 10 of 4 0.95None
Larval fat body9 32 of 4 2.90None
Larval trachea17 271 of 4 5.35None
Larval carcass5 10 of 4 1.69None
S2 cells (growing)2 00 of 4 0.61None
Whole fly3 10 of 4

Looking for FBgn0036394. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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