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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036395 through 18771 annotations produced 1 hits



(CG17361):

Annotation Number : CG17361
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036395
Gbrowse : chr3L:13990292-13991160 (+) // 100.0 //
Probeset : 1637730_at
Accessions : protein= NP_648678;, nucleotide= NM_140421;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0036395.
BDGP gene expression has embryonic in situ data for CG17361: 4 pix of staining in 1 body parts.
BioGrid reports that CG17361 interacts with CG8637 .
VDRC has 5 RNAi stocks for FBgn0036395 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain44 14 of 4 0.80Down
Head16 00 of 4 0.30Down
Eye24 14 of 4 0.45Down
Thoracicoabdominal ganglion41 34 of 4 0.80Down
Salivary gland19 40 of 4 0.37Down
Crop26 20 of 4 0.50Down
Midgut10 30 of 4 0.20Down
Tubule20 10 of 4 0.40Down
Hindgut14 10 of 4 0.30Down
Heart15 11 of 4 0.28Down
Fat body11 31 of 4 0.22Down
Ovary150 94 of 4 2.80Up
Testis9 13 of 4 0.20Down
Male accessory glands21 20 of 4 0.40Down
Virgin spermatheca14 00 of 4 0.26Down
Mated spermatheca16 10 of 4 0.30Down
Adult carcass14 20 of 4 0.30Down
Larval CNS48 54 of 4 0.90None
Larval Salivary gland17 10 of 4 0.33Down
Larval midgut10 10 of 4 0.19Down
Larval tubule19 11 of 4 0.40Down
Larval hindgut16 20 of 4 0.30Down
Larval fat body10 20 of 4 0.20Down
Larval trachea35 14 of 4 0.65Down
Larval carcass18 21 of 4 0.33Down
S2 cells (growing)42 24 of 4 0.78Down
Whole fly54 24 of 4

Looking for FBgn0036395. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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