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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036397 through 18771 annotations produced 1 hits



(CG8783):

Annotation Number : CG8783
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036397
Gbrowse : chr3L:13992479-13994980 (-) // 100.0 //
Probeset : 1639212_a_at
Accessions : protein= NP_648680; /// NP_729945;, nucleotide= NM_140423; /// NM_168570;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036397.
VDRC has 2 RNAi stocks for FBgn0036397 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain130 54 of 4 1.30Up
Head54 24 of 4 0.50Down
Eye34 14 of 4 0.34Down
Thoracicoabdominal ganglion122 34 of 4 1.20Up
Salivary gland71 74 of 4 0.71Down
Crop73 44 of 4 0.70Down
Midgut56 14 of 4 0.60Down
Tubule50 14 of 4 0.50Down
Hindgut53 34 of 4 0.50Down
Heart35 34 of 4 0.35Down
Fat body71 54 of 4 0.71Down
Ovary245 74 of 4 2.50Up
Testis67 34 of 4 0.70Down
Male accessory glands26 54 of 4 0.30Down
Virgin spermatheca44 54 of 4 0.44Down
Mated spermatheca45 24 of 4 0.45Down
Adult carcass38 34 of 4 0.40Down
Larval CNS125 94 of 4 1.26Up
Larval Salivary gland84 44 of 4 0.84None
Larval midgut47 34 of 4 0.48Down
Larval tubule76 34 of 4 0.80Down
Larval hindgut69 34 of 4 0.69Down
Larval fat body42 53 of 4 0.40Down
Larval trachea51 134 of 4 0.51Down
Larval carcass53 14 of 4 0.53Down
S2 cells (growing)82 44 of 4 0.82Down
Whole fly100 54 of 4

Looking for FBgn0036397. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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