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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036398 through 18771 annotations produced 1 hits



(CG9007):

Annotation Number : CG9007
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036398
Gbrowse : chr3L:13995248-14013251 (+) // 100.0 //
Probeset : 1636941_at
Accessions : protein= NP_648681;, nucleotide= NM_140424;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from elect
FlyMine data for FBgn0036398.
BioGrid reports that CG9007 interacts with CG9796 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain455 254 of 4 4.30Up
Head126 54 of 4 1.20Up
Eye63 34 of 4 0.59Down
Thoracicoabdominal ganglion260 264 of 4 2.50Up
Salivary gland111 74 of 4 1.05None
Crop238 114 of 4 2.20Up
Midgut110 114 of 4 1.00None
Tubule137 114 of 4 1.30Up
Hindgut223 154 of 4 2.10Up
Heart84 94 of 4 0.80None
Fat body208 354 of 4 1.97Up
Ovary289 124 of 4 2.70Up
Testis17 24 of 4 0.20Down
Male accessory glands237 154 of 4 2.20Up
Virgin spermatheca233 424 of 4 2.20None
Mated spermatheca239 314 of 4 2.26Up
Adult carcass136 114 of 4 1.30None
Larval CNS551 554 of 4 5.20Up
Larval Salivary gland76 74 of 4 0.72Down
Larval midgut68 74 of 4 0.64Down
Larval tubule127 114 of 4 1.20None
Larval hindgut107 24 of 4 1.02None
Larval fat body93 104 of 4 0.90None
Larval trachea126 324 of 4 1.19None
Larval carcass146 84 of 4 1.38Up
S2 cells (growing)354 114 of 4 3.34Up
Whole fly106 44 of 4

Looking for FBgn0036398. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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