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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036402 through 18771 annotations produced 1 hits



(CG6650):

Annotation Number : CG6650
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036402
Gbrowse : chr3L:14024592-14027745 (+) // 100.0 //
Probeset : 1640127_at
Accessions : protein= NP_648685;, nucleotide= NM_140428;
Interpro : "0016740 // transferase activity // inferred from electronic annotation /// 0016773 // phosphotransferase activity
FlyMine data for FBgn0036402.
BDGP gene expression has embryonic in situ data for CG6650: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0036402 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain191 ± 34 of 4 1.50Up
Head133 ± 84 of 4 1.00None
Eye101 ± 24 of 4 0.80Down
Thoracicoabdominal ganglion145 ± 54 of 4 1.10Up
Salivary gland114 ± 54 of 4 0.90None
Crop85 ± 44 of 4 0.70Down
Midgut44 ± 44 of 4 0.40Down
Tubule42 ± 04 of 4 0.30Down
Hindgut138 ± 34 of 4 1.10None
Heart118 ± 44 of 4 0.93None
Fat body203 ± 174 of 4 1.60Up
Ovary236 ± 34 of 4 1.90Up
Testis446 ± 184 of 4 3.50Up
Male accessory glands245 ± 94 of 4 1.90Up
Virgin spermatheca141 ± 94 of 4 1.12None
Mated spermatheca126 ± 64 of 4 1.00None
Adult carcass114 ± 84 of 4 0.90None
Larval CNS193 ± 74 of 4 1.52Up
Larval Salivary gland182 ± 24 of 4 1.44Up
Larval midgut48 ± 54 of 4 0.38Down
Larval tubule46 ± 24 of 4 0.40Down
Larval hindgut152 ± 84 of 4 1.20Up
Larval fat body297 ± 144 of 4 2.30Up
Larval trachea161 ± 44 of 4 1.27Up
Larval carcass114 ± 34 of 4 0.90None
S2 cells (growing)638 ± 94 of 4 5.03Up
Whole fly126 ± 44 of 4

Looking for FBgn0036402. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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