FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0036403 through 18771 annotations produced 2 hits

(CG6661):

Annotation Number : CR_tc_LD13184
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0046272
Gbrowse : chr3L:14027628-14029832 (-) // 100.0 //
Probeset : 1638103_at
Accessions : protein= , nucleotide= NR_002486;
Pathway : 0005759 // mitochondrial matrix // inferred from sequence similarity
Interpro : 0003842 // 1-pyrroline-5-carboxylate dehydrogenase activity // inferred from sequence similarity
FlyMine data for FBgn0046272.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	8 ± 1	1 of 4	1.20	None
Head	8 ± 1	0 of 4	1.30	None
Eye	3 ± 2	0 of 4	0.48	None
Thoracicoabdominal ganglion	10 ± 2	0 of 4	1.50	None
Salivary gland	11 ± 0	0 of 4	1.68	None
Crop	12 ± 1	0 of 4	1.80	None
Midgut	3 ± 1	0 of 4	0.60	None
Tubule	3 ± 0	0 of 4	0.50	Down
Hindgut	9 ± 1	0 of 4	1.50	None
Heart	6 ± 1	0 of 4	0.89	None
Fat body	9 ± 5	0 of 4	1.42	None
Ovary	9 ± 1	4 of 4	1.50	None
Testis	8 ± 0	2 of 4	1.30	None
Male accessory glands	22 ± 1	2 of 4	3.30	Up
Virgin spermatheca	7 ± 1	0 of 4	1.11	None
Mated spermatheca	6 ± 1	0 of 4	0.89	None
Adult carcass	7 ± 3	0 of 4	1.10	None
Larval CNS	5 ± 3	1 of 4	0.84	None
Larval Salivary gland	12 ± 1	0 of 4	1.87	None
Larval midgut	2 ± 0	0 of 4	0.33	None
Larval tubule	6 ± 1	0 of 4	1.00	None
Larval hindgut	5 ± 1	1 of 4	0.75	None
Larval fat body	19 ± 2	1 of 4	2.90	Up
Larval trachea	6 ± 3	1 of 4	0.91	None
Larval carcass	6 ± 0	0 of 4	0.96	None
S2 cells (growing)	6 ± 2	0 of 4	0.99	None
Whole fly	6 ± 1	0 of 4

(CG6661):

Annotation Number : CG6661
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036403
Gbrowse : chr3L:14027875-14029850 (+) // 100.0 //
Probeset : 1625548_at
Accessions : protein= NP_648686;, nucleotide= NM_140429;
Pathway : 0005759 // mitochondrial matrix // inferred from sequence or structural similarity
Interpro : 0003842 // 1-pyrroline-5-carboxylate dehydrogenase activity // inferred from sequence or structural similarity /// 00038
FlyMine data for FBgn0036403.
BDGP gene expression has embryonic in situ data for CG6661: 4 pix of staining in 1 body parts.
Homophila reports that CG6661 is a close match (4e-15) to human gene ALDH6A1;MMSDH (NP_005580), a gene associated with Methylmalonate semialdehyde dehydrogenase deficiency (3).
TRiP has 1 RNAi stocks for FBgn0036403 available for purchase.
VDRC has 4 RNAi stocks for FBgn0036403 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	0.00	Down
Head	1 ± 0	0 of 4	0.00	Down
Eye	3 ± 1	0 of 4	0.04	Down
Thoracicoabdominal ganglion	3 ± 1	0 of 4	0.00	Down
Salivary gland	8 ± 2	0 of 4	0.08	Down
Crop	3 ± 1	0 of 4	0.00	Down
Midgut	2 ± 1	0 of 4	0.00	Down
Tubule	4 ± 0	0 of 4	0.00	Down
Hindgut	3 ± 1	0 of 4	0.00	Down
Heart	4 ± 0	0 of 4	0.04	Down
Fat body	3 ± 4	0 of 4	0.03	Down
Ovary	1 ± 0	0 of 4	0.00	Down
Testis	1149 ± 64	4 of 4	10.60	Up
Male accessory glands	4 ± 0	0 of 4	0.00	Down
Virgin spermatheca	2 ± 0	0 of 4	0.02	Down
Mated spermatheca	2 ± 1	0 of 4	0.02	Down
Adult carcass	1 ± 0	0 of 4	0.00	Down
Larval CNS	0 ± 0	0 of 4	0.01	Down
Larval Salivary gland	2 ± 0	0 of 4	0.02	Down
Larval midgut	1 ± 0	0 of 4	0.02	Down
Larval tubule	2 ± 0	0 of 4	0.00	Down
Larval hindgut	5 ± 1	0 of 4	0.05	Down
Larval fat body	118 ± 72	3 of 4	1.10	None
Larval trachea	3 ± 5	0 of 4	0.03	Down
Larval carcass	2 ± 0	0 of 4	0.03	Down
S2 cells (growing)	15 ± 1	4 of 4	0.14	Down
Whole fly	108 ± 7	4 of 4

Looking for FBgn0036403. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720