FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0036405 through 18771 annotations produced 1 hits

(CG6833):

Annotation Number : CG6833
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036405
Gbrowse : chr3L:14044328-14045569 (+) // 99.68 //
Probeset : 1632262_at
Accessions : protein= NP_648689;, nucleotide= NM_140432;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred f
FlyMine data for FBgn0036405.
BDGP gene expression has embryonic in situ data for CG6833: 6 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0036405 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	79 ± 2	4 of 4	0.60	Down
Head	73 ± 7	4 of 4	0.50	Down
Eye	76 ± 3	4 of 4	0.56	Down
Thoracicoabdominal ganglion	76 ± 1	4 of 4	0.60	Down
Salivary gland	73 ± 3	4 of 4	0.53	Down
Crop	101 ± 4	4 of 4	0.70	Down
Midgut	98 ± 5	4 of 4	0.70	Down
Tubule	53 ± 5	4 of 4	0.40	Down
Hindgut	81 ± 6	4 of 4	0.60	Down
Heart	83 ± 3	4 of 4	0.61	Down
Fat body	79 ± 6	4 of 4	0.58	Down
Ovary	249 ± 8	4 of 4	1.80	Up
Testis	150 ± 7	4 of 4	1.10	None
Male accessory glands	112 ± 2	4 of 4	0.80	None
Virgin spermatheca	96 ± 6	4 of 4	0.71	Down
Mated spermatheca	125 ± 7	4 of 4	0.91	None
Adult carcass	71 ± 6	4 of 4	0.50	Down
Larval CNS	144 ± 8	4 of 4	1.05	None
Larval Salivary gland	181 ± 12	4 of 4	1.32	Up
Larval midgut	68 ± 3	4 of 4	0.50	Down
Larval tubule	68 ± 2	4 of 4	0.50	Down
Larval hindgut	109 ± 1	4 of 4	0.79	None
Larval fat body	119 ± 8	4 of 4	0.90	None
Larval trachea	162 ± 22	4 of 4	1.18	None
Larval carcass	109 ± 4	4 of 4	0.80	None
S2 cells (growing)	153 ± 3	4 of 4	1.12	None
Whole fly	137 ± 10	4 of 4

Looking for FBgn0036405. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720