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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036406 through 18771 annotations produced 1 hits



(CG13484):

Annotation Number : CG13484
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036406
Gbrowse : chr3L:14045640-14046096 (-) // 100.0 //
Probeset : 1632847_at
Accessions : protein= NP_648690;, nucleotide= NM_140433;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred f
FlyMine data for FBgn0036406.
VDRC has 4 RNAi stocks for FBgn0036406 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain62 ± 34 of 4 1.10None
Head48 ± 24 of 4 0.90None
Eye80 ± 54 of 4 1.42Up
Thoracicoabdominal ganglion69 ± 84 of 4 1.20None
Salivary gland43 ± 71 of 4 0.77None
Crop39 ± 33 of 4 0.70None
Midgut38 ± 20 of 4 0.70Down
Tubule36 ± 01 of 4 0.60Down
Hindgut32 ± 23 of 4 0.60Down
Heart27 ± 14 of 4 0.48Down
Fat body29 ± 60 of 4 0.52Down
Ovary108 ± 84 of 4 1.90Up
Testis35 ± 33 of 4 0.60Down
Male accessory glands40 ± 24 of 4 0.70None
Virgin spermatheca34 ± 21 of 4 0.61Down
Mated spermatheca40 ± 11 of 4 0.71None
Adult carcass32 ± 51 of 4 0.60Down
Larval CNS84 ± 214 of 4 1.49None
Larval Salivary gland56 ± 54 of 4 1.01None
Larval midgut27 ± 30 of 4 0.48Down
Larval tubule38 ± 24 of 4 0.70Down
Larval hindgut32 ± 32 of 4 0.58Down
Larval fat body22 ± 10 of 4 0.40Down
Larval trachea50 ± 44 of 4 0.89None
Larval carcass21 ± 20 of 4 0.39Down
S2 cells (growing)68 ± 34 of 4 1.20None
Whole fly56 ± 54 of 4

Looking for FBgn0036406. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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