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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036411 through 18771 annotations produced 1 hits



Sox21a (Sox21a):

Annotation Number : CG7345
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036411
Gbrowse : chr3L:14097353-14100174 (-) // 100.0 //
Probeset : 1624459_at
Accessions : protein= NP_648694;, nucleotide= NM_140437;
Pathway : engulfment // inferred from mutant phenotype /// 0045449 // regulation of transcription // inferred from sequence or st
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0036411.
Homophila reports that CG7345 is a close match (2e-16) to human gene SOX18;HLTS (NP_060889), a gene associated with Hypotrichosis-lymphedema-telangiectasia syndrome, 607823 (3).
TRiP has 1 RNAi stocks for FBgn0036411 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036411 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 11 of 4 0.60Down
Head18 21 of 4 0.80None
Eye4 10 of 4 0.21Down
Thoracicoabdominal ganglion19 31 of 4 0.80None
Salivary gland19 40 of 4 0.81None
Crop13 20 of 4 0.60Down
Midgut43 34 of 4 1.90Up
Tubule10 10 of 4 0.50Down
Hindgut16 20 of 4 0.70None
Heart6 10 of 4 0.28Down
Fat body9 50 of 4 0.39Down
Ovary12 10 of 4 0.50Down
Testis12 10 of 4 0.50Down
Male accessory glands9 30 of 4 0.40Down
Virgin spermatheca9 10 of 4 0.41Down
Mated spermatheca10 13 of 4 0.43Down
Adult carcass13 40 of 4 0.60None
Larval CNS20 21 of 4 0.85Down
Larval Salivary gland16 10 of 4 0.68Down
Larval midgut35 43 of 4 1.49None
Larval tubule8 20 of 4 0.30Down
Larval hindgut14 10 of 4 0.63Down
Larval fat body5 10 of 4 0.20Down
Larval trachea11 40 of 4 0.48Down
Larval carcass17 11 of 4 0.76Down
S2 cells (growing)19 20 of 4 0.81None
Whole fly23 10 of 4

Looking for FBgn0036411. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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