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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036414 through 18771 annotations produced 1 hits



nanchung (nan):

Annotation Number : CG5842
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036414
Gbrowse : chr3L:14179467-14182522 (-) // 100.0 //
Probeset : 1640192_at
Accessions : protein= NP_648696;, nucleotide= NM_140439;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005216 // ion channel activity // non-tracea
FlyMine data for FBgn0036414.
Homophila reports that CG5842 is a close match (5e-19) to human gene (NP_671737), a gene associated with .
TRiP has 2 RNAi stocks for FBgn0036414 available for purchase.
VDRC has 3 RNAi stocks for FBgn0036414 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.30None
Head3 ± 10 of 4 0.50None
Eye3 ± 00 of 4 0.54None
Thoracicoabdominal ganglion4 ± 10 of 4 0.70None
Salivary gland5 ± 10 of 4 0.77None
Crop9 ± 20 of 4 1.40None
Midgut8 ± 10 of 4 1.20None
Tubule12 ± 00 of 4 1.80Up
Hindgut3 ± 10 of 4 0.50None
Heart8 ± 11 of 4 1.29None
Fat body9 ± 60 of 4 1.39None
Ovary0 ± 00 of 4 0.10None
Testis3 ± 10 of 4 0.40None
Male accessory glands1 ± 00 of 4 0.20None
Virgin spermatheca7 ± 10 of 4 1.04None
Mated spermatheca5 ± 20 of 4 0.75None
Adult carcass11 ± 30 of 4 1.70None
Larval CNS2 ± 20 of 4 0.43None
Larval Salivary gland2 ± 00 of 4 0.34None
Larval midgut15 ± 20 of 4 2.35Up
Larval tubule5 ± 20 of 4 0.80None
Larval hindgut1 ± 00 of 4 0.28None
Larval fat body9 ± 30 of 4 1.40None
Larval trachea1 ± 10 of 4 0.26None
Larval carcass1 ± 00 of 4 0.29None
S2 cells (growing)5 ± 20 of 4 0.83None
Whole fly6 ± 10 of 4

Looking for FBgn0036414. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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