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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036415 through 18771 annotations produced 2 hits



(CG7768):

Annotation Number : CG7768
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036415
Gbrowse : chr3L:14211008-14212390 (+) // 100.0 //
Probeset : 1631760_at
Accessions : protein= NP_648697; /// NP_729966;, nucleotide= NM_140440; /// NM_168584;
Interpro : 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from sequence or structural similarity /// 0003755 /
FlyMine data for FBgn0036415.
BDGP gene expression has embryonic in situ data for CG7768: 18 pix of staining in 5 body parts.
VDRC has 2 RNAi stocks for FBgn0036415 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 14 of 4 2.90Up
Head4 11 of 4 1.10None
Eye4 12 of 4 1.17None
Thoracicoabdominal ganglion7 12 of 4 2.00None
Salivary gland81 104 of 421.14Up
Crop87 24 of 422.50Up
Midgut5 00 of 4 1.40None
Tubule9 12 of 4 2.40Up
Hindgut23 14 of 4 6.00Up
Heart13 04 of 4 3.51Up
Fat body9 14 of 4 2.54Up
Ovary1 00 of 4 0.40Down
Testis4 12 of 4 1.30None
Male accessory glands3 10 of 4 1.00None
Virgin spermatheca5 12 of 4 1.50None
Mated spermatheca12 34 of 4 3.14None
Adult carcass11 21 of 4 2.90None
Larval CNS5 13 of 4 1.48None
Larval Salivary gland4 00 of 4 1.24None
Larval midgut6 22 of 4 1.54None
Larval tubule15 24 of 4 3.90Up
Larval hindgut10 14 of 4 2.70Up
Larval fat body8 12 of 4 2.30None
Larval trachea14 34 of 4 3.79Up
Larval carcass2 10 of 4 0.69None
S2 cells (growing)1 00 of 4 0.26Down
Whole fly3 01 of 4



(CG7768):

Annotation Number : CG7768
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036415
Gbrowse : chr3L:14211324-14211977 (+) // 100.0 //
Probeset : 1639564_a_at
Accessions : protein= NP_648697; /// NP_729966;, nucleotide= NM_140440; /// NM_168584;
Interpro : 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from sequence or structural similarity /// 0003755 /
FlyMine data for FBgn0036415.
BDGP gene expression has embryonic in situ data for CG7768: 18 pix of staining in 5 body parts.
VDRC has 2 RNAi stocks for FBgn0036415 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 14 of 4 0.00Down
Head16 14 of 4 0.10Down
Eye7 23 of 4 0.02Down
Thoracicoabdominal ganglion13 23 of 4 0.00Down
Salivary gland2573 1134 of 4 7.83Up
Crop2037 474 of 4 6.20Up
Midgut24 24 of 4 0.10Down
Tubule31 24 of 4 0.10Down
Hindgut43 14 of 4 0.10Down
Heart8 22 of 4 0.03Down
Fat body9 53 of 4 0.03Down
Ovary7 11 of 4 0.00Down
Testis2444 604 of 4 7.40Up
Male accessory glands8 21 of 4 0.00Down
Virgin spermatheca10 11 of 4 0.03Down
Mated spermatheca11 12 of 4 0.03Down
Adult carcass20 24 of 4 0.10Down
Larval CNS9 04 of 4 0.03Down
Larval Salivary gland13 23 of 4 0.04Down
Larval midgut25 34 of 4 0.08Down
Larval tubule40 64 of 4 0.10Down
Larval hindgut95 124 of 4 0.29Down
Larval fat body504 2234 of 4 1.50None
Larval trachea27 304 of 4 0.08Down
Larval carcass10 10 of 4 0.03Down
S2 cells (growing)6 10 of 4 0.02Down
Whole fly328 104 of 4

Looking for FBgn0036415. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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