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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036416 through 18771 annotations produced 1 hits



(CG7924):

Annotation Number : CG7924
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036416
Gbrowse : chr3L:14226568-14227710 (+) // 100.0 //
Probeset : 1623570_at
Accessions : protein= NP_648698;, nucleotide= NM_140441;
FlyMine data for FBgn0036416.
BDGP gene expression has embryonic in situ data for CG7924: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0036416 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 03 of 4 1.80Up
Head4 ± 11 of 4 1.20None
Eye7 ± 23 of 4 1.91None
Thoracicoabdominal ganglion7 ± 22 of 4 1.90None
Salivary gland20 ± 51 of 4 5.12Up
Crop15 ± 13 of 4 3.90Up
Midgut4 ± 10 of 4 1.10None
Tubule9 ± 12 of 4 2.40Up
Hindgut7 ± 10 of 4 1.80None
Heart9 ± 13 of 4 2.30Up
Fat body14 ± 52 of 4 3.69Up
Ovary3 ± 00 of 4 0.70None
Testis2 ± 00 of 4 0.60None
Male accessory glands5 ± 30 of 4 1.40None
Virgin spermatheca14 ± 13 of 4 3.61Up
Mated spermatheca15 ± 33 of 4 3.78None
Adult carcass3 ± 10 of 4 0.90None
Larval CNS5 ± 22 of 4 1.33None
Larval Salivary gland5 ± 10 of 4 1.27None
Larval midgut5 ± 20 of 4 1.25None
Larval tubule13 ± 23 of 4 3.40Up
Larval hindgut6 ± 00 of 4 1.51None
Larval fat body4 ± 10 of 4 1.10None
Larval trachea7 ± 23 of 4 1.98None
Larval carcass1030 ± 6634 of 4256.14None
S2 cells (growing)2 ± 10 of 4 0.53None
Whole fly4 ± 00 of 4

Looking for FBgn0036416. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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