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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036421 through 18771 annotations produced 1 hits



(CG13481):

Annotation Number : CG13481
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036421
Gbrowse : chr3L:14362220-14362743 (-) // 100.0 //
Probeset : 1640316_at
Accessions : protein= NP_001097605;, nucleotide= NM_001104135;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from elect
FlyMine data for FBgn0036421.
VDRC has 3 RNAi stocks for FBgn0036421 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 11 of 4 0.10Down
Head2 ± 10 of 4 0.10Down
Eye6 ± 00 of 4 0.19Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.10Down
Salivary gland7 ± 10 of 4 0.22Down
Crop5 ± 10 of 4 0.20Down
Midgut8 ± 21 of 4 0.30Down
Tubule5 ± 00 of 4 0.20Down
Hindgut6 ± 20 of 4 0.20Down
Heart3 ± 10 of 4 0.10Down
Fat body10 ± 61 of 4 0.32Down
Ovary3 ± 00 of 4 0.10Down
Testis457 ± 134 of 413.70Up
Male accessory glands11 ± 21 of 4 0.40Down
Virgin spermatheca9 ± 22 of 4 0.28Down
Mated spermatheca13 ± 33 of 4 0.39Down
Adult carcass5 ± 10 of 4 0.20Down
Larval CNS5 ± 13 of 4 0.16Down
Larval Salivary gland7 ± 20 of 4 0.21Down
Larval midgut4 ± 00 of 4 0.15Down
Larval tubule6 ± 10 of 4 0.20Down
Larval hindgut4 ± 10 of 4 0.14Down
Larval fat body61 ± 294 of 4 1.80None
Larval trachea7 ± 82 of 4 0.22Down
Larval carcass2 ± 00 of 4 0.08Down
S2 cells (growing)2 ± 00 of 4 0.07Down
Whole fly33 ± 14 of 4

Looking for FBgn0036421. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime