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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036426 through 18771 annotations produced 1 hits



(CG9592):

Annotation Number : CG9592
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036426
Gbrowse : chr3L:14510915-14512428 (+) // 100.0 //
Probeset : 1641003_at
Accessions : protein= NP_648706;, nucleotide= NM_140449;
FlyMine data for FBgn0036426.
VDRC has 7 RNAi stocks for FBgn0036426 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head2 00 of 4 0.10Down
Eye0 00 of 4 0.02Down
Thoracicoabdominal ganglion2 10 of 4 0.10Down
Salivary gland13 21 of 4 0.70None
Crop5 11 of 4 0.30Down
Midgut4 00 of 4 0.20Down
Tubule2 00 of 4 0.10Down
Hindgut4 00 of 4 0.20Down
Heart0 00 of 4 0.03Down
Fat body6 40 of 4 0.31Down
Ovary1 00 of 4 0.10Down
Testis274 84 of 413.90Up
Male accessory glands2 00 of 4 0.10Down
Virgin spermatheca4 00 of 4 0.22Down
Mated spermatheca2 00 of 4 0.14Down
Adult carcass4 10 of 4 0.20Down
Larval CNS4 10 of 4 0.24Down
Larval Salivary gland1 00 of 4 0.09Down
Larval midgut6 01 of 4 0.35Down
Larval tubule2 10 of 4 0.10Down
Larval hindgut3 00 of 4 0.19Down
Larval fat body25 112 of 4 1.30None
Larval trachea4 31 of 4 0.21Down
Larval carcass1 00 of 4 0.06Down
S2 cells (growing)1 00 of 4 0.07Down
Whole fly19 24 of 4

Looking for FBgn0036426. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime