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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036427 through 18771 annotations produced 1 hits



(CG4613):

Annotation Number : CG4613
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036427
Gbrowse : chr3L:14512952-14514827 (-) // 100.0 //
Probeset : 1633769_at
Accessions : protein= NP_648707;, nucleotide= NM_140450;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0036427.
Homophila reports that CG4613 is a close match (1e-12) to human gene HP (NP_005134), a gene associated with [Anhaptoglobinemia] (3);[Hypohaptoglobinemia] (3).
VDRC has 2 RNAi stocks for FBgn0036427 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.50None
Head10 ± 10 of 4 1.70None
Eye2 ± 00 of 4 0.38None
Thoracicoabdominal ganglion3 ± 10 of 4 0.60None
Salivary gland15 ± 51 of 4 2.47None
Crop8 ± 20 of 4 1.40None
Midgut26 ± 23 of 4 4.20Up
Tubule19 ± 10 of 4 3.10Up
Hindgut15 ± 13 of 4 2.50Up
Heart2 ± 00 of 4 0.41None
Fat body19 ± 74 of 4 3.21Up
Ovary2 ± 10 of 4 0.40None
Testis14 ± 14 of 4 2.30Up
Male accessory glands13 ± 41 of 4 2.20None
Virgin spermatheca49 ± 44 of 4 8.00Up
Mated spermatheca53 ± 74 of 4 8.71Up
Adult carcass6 ± 10 of 4 1.10None
Larval CNS9 ± 33 of 4 1.52None
Larval Salivary gland15 ± 30 of 4 2.46None
Larval midgut32 ± 14 of 4 5.32Up
Larval tubule15 ± 20 of 4 2.50Up
Larval hindgut14 ± 12 of 4 2.32Up
Larval fat body16 ± 22 of 4 2.60Up
Larval trachea5 ± 20 of 4 0.81None
Larval carcass17 ± 14 of 4 2.86Up
S2 cells (growing)13 ± 12 of 4 2.22Up
Whole fly6 ± 10 of 4

Looking for FBgn0036427. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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