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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036433 through 18771 annotations produced 1 hits



(CG9628):

Annotation Number : CG9628
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036433
Gbrowse : chr3L:14615909-14621274 (+) // 100.0 //
Probeset : 1634238_a_at
Accessions : protein= NP_001163442; /// NP_648710; /// NP_729982;, nucleotide= NM_001169971; /// NM_140453; /// NM_168590;
FlyMine data for FBgn0036433.
BDGP gene expression has embryonic in situ data for CG9628: 14 pix of staining in 16 body parts.
VDRC has 3 RNAi stocks for FBgn0036433 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain147 54 of 4 0.40Down
Head1062 484 of 4 2.70Up
Eye1629 444 of 4 4.17Up
Thoracicoabdominal ganglion106 64 of 4 0.30Down
Salivary gland2779 1754 of 4 7.10Up
Crop2116 444 of 4 5.40Up
Midgut53 34 of 4 0.10Down
Tubule32 24 of 4 0.10Down
Hindgut1279 474 of 4 3.30Up
Heart95 74 of 4 0.25Down
Fat body73 214 of 4 0.19Down
Ovary102 44 of 4 0.30Down
Testis49 24 of 4 0.10Down
Male accessory glands3835 2304 of 4 9.80Up
Virgin spermatheca974 164 of 4 2.49Up
Mated spermatheca1025 1284 of 4 2.62Up
Adult carcass1216 754 of 4 3.10Up
Larval CNS80 134 of 4 0.21Down
Larval Salivary gland140 124 of 4 0.36Down
Larval midgut30 34 of 4 0.08Down
Larval tubule8 20 of 4 0.00Down
Larval hindgut488 564 of 4 1.25None
Larval fat body39 54 of 4 0.10Down
Larval trachea1000 2534 of 4 2.56Up
Larval carcass199 174 of 4 0.51Down
S2 cells (growing)10 04 of 4 0.03Down
Whole fly391 104 of 4

Looking for FBgn0036433. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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