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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036436 through 18771 annotations produced 1 hits


Annotation Number : CG4914
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036436
Gbrowse : chr3L:14667632-14671234 (-) // 100.0 //
Probeset : 1636313_at
Accessions : protein= NP_648711;, nucleotide= NM_140454;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0036436.
BDGP gene expression has embryonic in situ data for CG4914: 66 pix of staining in 8 body parts.
Homophila reports that CG4914 is a close match (2e-16) to human gene ELA2 (NP_001963), a gene associated with Hematopoiesis, cyclic, 162800 (3);Neutropenia, congenital, 202700 (3).

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.20Down
Head34 34 of 4 4.30Up
Eye82 64 of 410.47Up
Thoracicoabdominal ganglion1 00 of 4 0.20Down
Salivary gland12 30 of 4 1.53None
Crop4 10 of 4 0.50None
Midgut4 10 of 4 0.60None
Tubule5 10 of 4 0.70Down
Hindgut19 14 of 4 2.40Up
Heart2 10 of 4 0.36Down
Fat body4 20 of 4 0.58None
Ovary5 00 of 4 0.70None
Testis7 11 of 4 0.90None
Male accessory glands5 20 of 4 0.60None
Virgin spermatheca2 00 of 4 0.29Down
Mated spermatheca2 10 of 4 0.32Down
Adult carcass4 10 of 4 0.50None
Larval CNS6 21 of 4 0.84None
Larval Salivary gland6 10 of 4 0.86None
Larval midgut7 00 of 4 0.92None
Larval tubule71 64 of 4 9.00Up
Larval hindgut46 24 of 4 5.85Up
Larval fat body1 00 of 4 0.20Down
Larval trachea162 154 of 420.58Up
Larval carcass116 194 of 414.77Up
S2 cells (growing)2 10 of 4 0.37Down
Whole fly7 13 of 4

Looking for FBgn0036436. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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