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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036438 through 18771 annotations produced 1 hits



(CG13477):

Annotation Number : CG13477
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036438
Gbrowse : chr3L:14684467-14684970 (+) // 100.0 //
Probeset : 1622975_at
Accessions : protein= NP_648713;, nucleotide= NM_140456;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036438.
BioGrid reports that CG13477 interacts with CG9893 CG13838 CG2774 CG7919 .
VDRC has 2 RNAi stocks for FBgn0036438 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye2 ± 10 of 4 0.01Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland9 ± 50 of 4 0.04Down
Crop1 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule3 ± 00 of 4 0.00Down
Hindgut3 ± 10 of 4 0.00Down
Heart1 ± 00 of 4 0.00Down
Fat body1 ± 00 of 4 0.01Down
Ovary1 ± 10 of 4 0.00Down
Testis2111 ± 734 of 4 9.30Up
Male accessory glands5 ± 20 of 4 0.00Down
Virgin spermatheca3 ± 10 of 4 0.01Down
Mated spermatheca1 ± 00 of 4 0.01Down
Adult carcass4 ± 10 of 4 0.00Down
Larval CNS1 ± 10 of 4 0.01Down
Larval Salivary gland2 ± 00 of 4 0.01Down
Larval midgut2 ± 10 of 4 0.01Down
Larval tubule2 ± 00 of 4 0.00Down
Larval hindgut4 ± 20 of 4 0.02Down
Larval fat body237 ± 1244 of 4 1.00None
Larval trachea13 ± 201 of 4 0.06Down
Larval carcass4 ± 20 of 4 0.02Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly226 ± 174 of 4

Looking for FBgn0036438. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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