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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036439 through 18771 annotations produced 1 hits



(CG13474):

Annotation Number : CG13474
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036439
Gbrowse : chr3L:14689649-14690205 (-) // 100.0 //
Probeset : 1636786_at
Accessions : protein= NP_648714;, nucleotide= NM_140457;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036439.
BioGrid reports that CG13474 interacts with CG14133 CG5134 CG6819 CG15124 CG2709 CG5103 CG5642 CG6605 CG7765 CG8309 .
TRiP has 1 RNAi stocks for FBgn0036439 available for purchase.
VDRC has 3 RNAi stocks for FBgn0036439 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head3 10 of 4 0.30Down
Eye3 10 of 4 0.36Down
Thoracicoabdominal ganglion2 00 of 4 0.20Down
Salivary gland6 20 of 4 0.63None
Crop4 10 of 4 0.40Down
Midgut1 00 of 4 0.10Down
Tubule3 10 of 4 0.40Down
Hindgut4 00 of 4 0.40Down
Heart1 10 of 4 0.15Down
Fat body1 10 of 4 0.14Down
Ovary1 00 of 4 0.10Down
Testis122 74 of 412.40Up
Male accessory glands5 20 of 4 0.50None
Virgin spermatheca0 00 of 4 0.08Down
Mated spermatheca2 10 of 4 0.26Down
Adult carcass4 30 of 4 0.50None
Larval CNS1 10 of 4 0.13Down
Larval Salivary gland4 00 of 4 0.43Down
Larval midgut6 10 of 4 0.63None
Larval tubule4 10 of 4 0.50Down
Larval hindgut2 10 of 4 0.21Down
Larval fat body21 82 of 4 2.20None
Larval trachea3 30 of 4 0.36Down
Larval carcass1 00 of 4 0.15Down
S2 cells (growing)3 10 of 4 0.35Down
Whole fly9 01 of 4

Looking for FBgn0036439. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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