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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036448 through 18771 annotations produced 1 hits



myopic (mop):

Annotation Number : CG9311
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036448
Gbrowse : chr3L:14762440-14769243 (-) // 100.0 //
Probeset : 1635842_at
Accessions : protein= NP_648722;, nucleotide= NM_140465;
Pathway : 0005768 // endosome // inferred from direct assay /// 0031982 // vesicle // inferred from direct assay /// 0033565 // ES
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine ph
FlyMine data for FBgn0036448.
Homophila reports that CG9311 is a close match (6e-11) to human gene CD45;LCA;PTPRC (NP_002829), a gene associated with Severe combined immunodeficiency due to PTPRC deficiency (3);{Hepatitic C virus, susceptibility to}, 609532 (3);{Multiple sclerosis, susceptibility to}, 126200 (3).
TRiP has 3 RNAi stocks for FBgn0036448 available for purchase.
VDRC has 3 RNAi stocks for FBgn0036448 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain267 ± 04 of 4 1.20None
Head232 ± 54 of 4 1.00None
Eye505 ± 204 of 4 2.19Up
Thoracicoabdominal ganglion334 ± 194 of 4 1.40Up
Salivary gland322 ± 154 of 4 1.39Up
Crop313 ± 124 of 4 1.40Up
Midgut252 ± 64 of 4 1.10None
Tubule349 ± 104 of 4 1.50Up
Hindgut343 ± 74 of 4 1.50Up
Heart230 ± 134 of 4 1.00None
Fat body139 ± 114 of 4 0.60Down
Ovary424 ± 104 of 4 1.80Up
Testis140 ± 124 of 4 0.60Down
Male accessory glands376 ± 134 of 4 1.60Up
Virgin spermatheca214 ± 154 of 4 0.93None
Mated spermatheca212 ± 124 of 4 0.92None
Adult carcass155 ± 54 of 4 0.70Down
Larval CNS346 ± 184 of 4 1.50Up
Larval Salivary gland384 ± 164 of 4 1.66Up
Larval midgut482 ± 574 of 4 2.09Up
Larval tubule1058 ± 564 of 4 4.60Up
Larval hindgut692 ± 514 of 4 3.00Up
Larval fat body295 ± 344 of 4 1.30None
Larval trachea382 ± 304 of 4 1.66Up
Larval carcass286 ± 364 of 4 1.24None
S2 cells (growing)523 ± 134 of 4 2.27Up
Whole fly230 ± 134 of 4

Looking for FBgn0036448. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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