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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036449 through 18771 annotations produced 1 hits



CG5295 (bmm):

Annotation Number : CG5295
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036449
Gbrowse : chr3L:14769595-14779523 (-) // 100.0 //
Probeset : 1640754_at
Accessions : protein= NP_001163445; /// NP_648723;, nucleotide= NM_001169974; /// NM_140466;
Pathway : 0005811 // lipid particle // inferred from direct assay
Interpro : 0004806 // triglyceride lipase activity // inferred from direct assay /// 0004806 // triglyceride lipase activity // inf
FlyMine data for FBgn0036449.
BDGP gene expression has embryonic in situ data for CG5295: 60 pix of staining in 15 body parts.
Homophila reports that CG5295 is a close match (6e-63) to human gene ATGL;PNPLA2;TTS2 (NP_065109), a gene associated with Neutral lipid storage disease with myopathy, 610717 (3).
TRiP has 1 RNAi stocks for FBgn0036449 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036449 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain164 164 of 4 0.50Down
Head331 524 of 4 1.00None
Eye376 144 of 4 1.16Up
Thoracicoabdominal ganglion150 84 of 4 0.50Down
Salivary gland523 404 of 4 1.61Up
Crop742 294 of 4 2.30Up
Midgut1139 484 of 4 3.50Up
Tubule165 394 of 4 0.50Down
Hindgut555 174 of 4 1.70Up
Heart861 364 of 4 2.65Up
Fat body897 384 of 4 2.76Up
Ovary393 54 of 4 1.20Up
Testis113 74 of 4 0.30Down
Male accessory glands92 14 of 4 0.30Down
Virgin spermatheca2598 1934 of 4 7.98Up
Mated spermatheca893 1594 of 4 2.74Up
Adult carcass561 194 of 4 1.70Up
Larval CNS79 34 of 4 0.24Down
Larval Salivary gland54 44 of 4 0.17Down
Larval midgut790 924 of 4 2.43Up
Larval tubule86 54 of 4 0.30Down
Larval hindgut100 204 of 4 0.31Down
Larval fat body484 474 of 4 1.50Up
Larval trachea68 94 of 4 0.21Down
Larval carcass62 34 of 4 0.19Down
S2 cells (growing)248 54 of 4 0.76Down
Whole fly325 124 of 4

Looking for FBgn0036449. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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