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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036451 through 18771 annotations produced 1 hits



(CG9425):

Annotation Number : CG9425
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036451
Gbrowse : chr3L:14785230-14792450 (+) // 100.0 //
Probeset : 1631942_at
Accessions : protein= NP_648725; /// NP_996084;, nucleotide= NM_140468; /// NM_206362;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0036451.
Homophila reports that CG9425 is a close match (4e-14) to human gene CATF1;HMN6;IGHMBP2;SMARD1;SMUBP2 (NP_002171), a gene associated with Neuronopathy, distal hereditary motor, type VI, 604320 (3).
TRiP has 1 RNAi stocks for FBgn0036451 available for purchase.
VDRC has 1 RNAi stocks for FBgn0036451 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain573 284 of 4 6.30Up
Head140 194 of 4 1.50None
Eye283 144 of 4 3.10Up
Thoracicoabdominal ganglion563 244 of 4 6.20Up
Salivary gland121 224 of 4 1.33None
Crop148 154 of 4 1.60Up
Midgut81 54 of 4 0.90None
Tubule106 34 of 4 1.20Up
Hindgut148 94 of 4 1.60Up
Heart204 54 of 4 2.24Up
Fat body112 114 of 4 1.23None
Ovary169 44 of 4 1.90Up
Testis71 44 of 4 0.80None
Male accessory glands137 34 of 4 1.50Up
Virgin spermatheca86 24 of 4 0.94None
Mated spermatheca78 34 of 4 0.86None
Adult carcass134 74 of 4 1.50Up
Larval CNS287 244 of 4 3.15Up
Larval Salivary gland147 34 of 4 1.61Up
Larval midgut87 44 of 4 0.96None
Larval tubule166 64 of 4 1.80Up
Larval hindgut139 44 of 4 1.53Up
Larval fat body88 114 of 4 1.00None
Larval trachea265 134 of 4 2.91Up
Larval carcass98 124 of 4 1.08None
S2 cells (growing)164 84 of 4 1.81Up
Whole fly91 74 of 4

Looking for FBgn0036451. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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