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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036454 through 18771 annotations produced 1 hits



(CG17839):

Annotation Number : CG17839
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036454
Gbrowse : chr3L:14798351-14874834 (+) // 100.0 //
Probeset : 1623767_at
Accessions : protein= NP_001036606; /// NP_996085;, nucleotide= NM_001043141; /// NM_206363;
FlyMine data for FBgn0036454.
VDRC has 7 RNAi stocks for FBgn0036454 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain164 54 of 4 3.50Up
Head216 154 of 4 4.60Up
Eye142 84 of 4 3.03Up
Thoracicoabdominal ganglion146 184 of 4 3.10Up
Salivary gland418 294 of 4 8.92Up
Crop425 224 of 4 9.10Up
Midgut7 20 of 4 0.20Down
Tubule10 10 of 4 0.20Down
Hindgut166 34 of 4 3.50Up
Heart25 44 of 4 0.55Down
Fat body23 44 of 4 0.51Down
Ovary5 10 of 4 0.10Down
Testis42 14 of 4 0.90None
Male accessory glands8 41 of 4 0.20Down
Virgin spermatheca24 14 of 4 0.52Down
Mated spermatheca25 34 of 4 0.55Down
Adult carcass233 104 of 4 5.00Up
Larval CNS33 94 of 4 0.71None
Larval Salivary gland21 10 of 4 0.46Down
Larval midgut6 20 of 4 0.13Down
Larval tubule9 10 of 4 0.20Down
Larval hindgut39 54 of 4 0.84None
Larval fat body11 30 of 4 0.20Down
Larval trachea47 64 of 4 1.01None
Larval carcass159 374 of 4 3.41None
S2 cells (growing)15 11 of 4 0.32Down
Whole fly46 14 of 4

Looking for FBgn0036454. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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