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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036459 through 18771 annotations produced 1 hits



(CG3349):

Annotation Number : CG3349
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036459
Gbrowse : chr3L:14973208-14975443 (+) // 100.0 //
Probeset : 1640866_at
Accessions : protein= NP_648730;, nucleotide= NM_140473;
FlyMine data for FBgn0036459.
VDRC has 2 RNAi stocks for FBgn0036459 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.70None
Head0 ± 00 of 4 0.10None
Eye0 ± 00 of 4 0.25None
Thoracicoabdominal ganglion1 ± 10 of 4 0.90None
Salivary gland5 ± 30 of 4 2.76None
Crop2 ± 00 of 4 1.40None
Midgut2 ± 00 of 4 1.10None
Tubule1 ± 00 of 4 0.80None
Hindgut1 ± 10 of 4 0.90None
Heart1 ± 00 of 4 0.56None
Fat body6 ± 21 of 4 3.25Up
Ovary0 ± 00 of 4 0.20None
Testis1 ± 00 of 4 0.50None
Male accessory glands152 ± 34 of 476.00Up
Virgin spermatheca1 ± 00 of 4 0.80None
Mated spermatheca1 ± 00 of 4 0.74None
Adult carcass4 ± 10 of 4 2.30None
Larval CNS1 ± 12 of 4 0.98None
Larval Salivary gland1 ± 00 of 4 0.51None
Larval midgut1 ± 00 of 4 0.59None
Larval tubule2 ± 00 of 4 1.10None
Larval hindgut0 ± 00 of 4 0.38None
Larval fat body1 ± 00 of 4 0.70None
Larval trachea0 ± 00 of 4 0.36None
Larval carcass1 ± 00 of 4 0.59None
S2 cells (growing)1 ± 00 of 4 0.84None
Whole fly2 ± 10 of 4

Looking for FBgn0036459. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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