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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036467 through 18771 annotations produced 1 hits



(CG12310):

Annotation Number : CG12310
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036467
Gbrowse : chr3L:15043356-15043905 (-) // 100.0 //
Probeset : 1640683_at
Accessions : protein= NP_648737;, nucleotide= NM_140480;
FlyMine data for FBgn0036467.
BDGP gene expression has embryonic in situ data for CG12310: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0036467 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.10Down
Head9 10 of 4 0.30Down
Eye6 00 of 4 0.16Down
Thoracicoabdominal ganglion18 62 of 4 0.50None
Salivary gland4666 3324 of 4125.28Up
Crop69 94 of 4 1.90Up
Midgut8 11 of 4 0.20Down
Tubule45 64 of 4 1.20None
Hindgut3 10 of 4 0.10Down
Heart4 10 of 4 0.12Down
Fat body11 21 of 4 0.30Down
Ovary2 00 of 4 0.10Down
Testis8 00 of 4 0.20Down
Male accessory glands64 104 of 4 1.70None
Virgin spermatheca6 10 of 4 0.18Down
Mated spermatheca5 10 of 4 0.15Down
Adult carcass38 54 of 4 1.00None
Larval CNS6 31 of 4 0.16Down
Larval Salivary gland8544 5554 of 4229.37Up
Larval midgut10 21 of 4 0.29Down
Larval tubule3 10 of 4 0.10Down
Larval hindgut7 10 of 4 0.21Down
Larval fat body297 1143 of 4 8.00None
Larval trachea139 2333 of 4 3.73None
Larval carcass9 01 of 4 0.26Down
S2 cells (growing)4 10 of 4 0.11Down
Whole fly37 54 of 4

Looking for FBgn0036467. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime