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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036470 through 18771 annotations produced 1 hits


(CG13463):

Annotation Number : CG13463
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036470
Gbrowse : chr3L:15047870-15048665 (+) // 99.25 //
Probeset : 1625953_at
Accessions : protein= NP_648740;, nucleotide= NM_140483;
FlyMine data for FBgn0036470.
BDGP gene expression has embryonic in situ data for CG13463: 6 pix of staining in 2 body parts.
BioGrid reports that CG13463 interacts with CG6467 CG7011 .
VDRC has 2 RNAi stocks for FBgn0036470 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10Down
Head2 ± 11 of 4 0.10Down
Eye2 ± 10 of 4 0.08Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland149 ± 74 of 4 4.49Up
Crop9 ± 30 of 4 0.30None
Midgut2 ± 10 of 4 0.10Down
Tubule2 ± 10 of 4 0.10Down
Hindgut2 ± 00 of 4 0.10Down
Heart4 ± 11 of 4 0.12Down
Fat body5 ± 10 of 4 0.16Down
Ovary1 ± 00 of 4 0.00Down
Testis76 ± 04 of 4 2.30Up
Male accessory glands4 ± 10 of 4 0.10Down
Virgin spermatheca4 ± 11 of 4 0.14Down
Mated spermatheca1 ± 00 of 4 0.06Down
Adult carcass3 ± 20 of 4 0.10Down
Larval CNS1 ± 10 of 4 0.06Down
Larval Salivary gland40 ± 53 of 4 1.21None
Larval midgut2 ± 10 of 4 0.08Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut2 ± 00 of 4 0.06Down
Larval fat body14 ± 71 of 4 0.40None
Larval trachea2 ± 10 of 4 0.08Down
Larval carcass1 ± 00 of 4 0.06Down
S2 cells (growing)1 ± 00 of 4 0.04Down
Whole fly33 ± 83 of 4

Looking for FBgn0036470. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime