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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036471 through 18771 annotations produced 1 hits



(CG13460):

Annotation Number : CG13460
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036471
Gbrowse : chr3L:15054167-15054821 (-) // 100.0 //
Probeset : 1640205_at
Accessions : protein= NP_648741;, nucleotide= NM_140484;
FlyMine data for FBgn0036471.
VDRC has 2 RNAi stocks for FBgn0036471 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 0.90None
Head3 ± 10 of 4 0.50None
Eye3 ± 10 of 4 0.62None
Thoracicoabdominal ganglion5 ± 20 of 4 1.00None
Salivary gland13 ± 80 of 4 2.15None
Crop4 ± 10 of 4 0.70None
Midgut7 ± 20 of 4 1.30None
Tubule3 ± 00 of 4 0.60Down
Hindgut3 ± 00 of 4 0.60None
Heart7 ± 00 of 4 1.15None
Fat body18 ± 10 of 4 3.09Up
Ovary1 ± 00 of 4 0.20None
Testis16 ± 10 of 4 2.70Up
Male accessory glands3 ± 00 of 4 0.60None
Virgin spermatheca13 ± 30 of 4 2.21None
Mated spermatheca17 ± 10 of 4 2.84Up
Adult carcass8 ± 20 of 4 1.40None
Larval CNS2 ± 00 of 4 0.34None
Larval Salivary gland10157 ± 7214 of 41672.05Up
Larval midgut68 ± 123 of 411.20Up
Larval tubule3 ± 10 of 4 0.60None
Larval hindgut45 ± 143 of 4 7.54None
Larval fat body12 ± 30 of 4 2.00None
Larval trachea11 ± 161 of 4 1.91None
Larval carcass16 ± 30 of 4 2.63Up
S2 cells (growing)3 ± 00 of 4 0.53None
Whole fly6 ± 10 of 4

Looking for FBgn0036471. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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