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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036479 through 18771 annotations produced 1 hits



(CG13458):

Annotation Number : CG13458
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036479
Gbrowse : chr3L:15106656-15109473 (+) // 100.0 //
Probeset : 1635298_at
Accessions : protein= NP_648748;, nucleotide= NM_140491;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electr
FlyMine data for FBgn0036479.
BDGP gene expression has embryonic in situ data for CG13458: 2 pix of staining in 1 body parts.
BioGrid reports that CG13458 interacts with CG3052 CG7354 CG1360 CG13627 CG14025 CG1422 CG14549 CG1467 CG14904 CG14905 CG15109 CG15632 CG15634 CG15820 CG1587 CG16717 CG1676 CG16984 CG17050 CG17237 CG17829 CG1841 CG18584 CG1871 CG2096 CG2163 CG2261 CG2851 CG2910 CG3078 CG31121 CG31797 CG3193 CG31958 CG3201 CG32086 CG32100 CG3295 CG33017 CG3668 CG3875 CG4004 CG4038 CG4570 CG4896 CG5009 CG5050 CG5089 CG5380 CG5618 CG6117 CG6757 CG6891 CG7281 CG7518 CG7611 CG7761 CG7763 CG7803 CG8145 CG8198 CG8282 CG8286 CG8617 CG8676 CG8725 CG9099 CG9412 .
VDRC has 3 RNAi stocks for FBgn0036479 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain48 ± 14 of 4 1.90Up
Head35 ± 24 of 4 1.40Up
Eye19 ± 14 of 4 0.74Down
Thoracicoabdominal ganglion29 ± 04 of 4 1.20None
Salivary gland23 ± 60 of 4 0.91None
Crop5 ± 10 of 4 0.20Down
Midgut4 ± 10 of 4 0.20Down
Tubule1 ± 00 of 4 0.10Down
Hindgut6 ± 20 of 4 0.30Down
Heart96 ± 194 of 4 3.77Up
Fat body14 ± 50 of 4 0.57Down
Ovary1 ± 00 of 4 0.10Down
Testis40 ± 34 of 4 1.60Up
Male accessory glands8 ± 20 of 4 0.30Down
Virgin spermatheca3 ± 00 of 4 0.12Down
Mated spermatheca3 ± 00 of 4 0.14Down
Adult carcass89 ± 64 of 4 3.50Up
Larval CNS20 ± 24 of 4 0.81None
Larval Salivary gland8 ± 31 of 4 0.32Down
Larval midgut8 ± 10 of 4 0.32Down
Larval tubule3 ± 10 of 4 0.10Down
Larval hindgut4 ± 10 of 4 0.17Down
Larval fat body18 ± 11 of 4 0.70Down
Larval trachea3 ± 20 of 4 0.13Down
Larval carcass15 ± 23 of 4 0.59Down
S2 cells (growing)6 ± 20 of 4 0.25Down
Whole fly25 ± 14 of 4

Looking for FBgn0036479. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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