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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036481 through 18771 annotations produced 1 hits



(CG16959):

Annotation Number : CG16959
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036481
Gbrowse : chr3L:15112969-15118418 (-) // 100.0 //
Probeset : 1624787_s_at
Accessions : protein= NP_648750; /// NP_730025;, nucleotide= NM_140493; /// NM_168608;
FlyMine data for FBgn0036481.
BDGP gene expression has embryonic in situ data for CG16959: 25 pix of staining in 12 body parts.
VDRC has 3 RNAi stocks for FBgn0036481 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 03 of 4 1.40None
Head18 14 of 4 3.50Up
Eye34 54 of 4 6.37Up
Thoracicoabdominal ganglion1 10 of 4 0.30None
Salivary gland2 00 of 4 0.36None
Crop1 00 of 4 0.30None
Midgut9 12 of 4 1.80None
Tubule3 00 of 4 0.70Down
Hindgut11 13 of 4 2.20None
Heart1 00 of 4 0.26None
Fat body2 20 of 4 0.37None
Ovary2 00 of 4 0.50None
Testis6 14 of 4 1.30None
Male accessory glands49 164 of 4 9.30None
Virgin spermatheca1 00 of 4 0.20None
Mated spermatheca1 00 of 4 0.30None
Adult carcass6 30 of 4 1.20None
Larval CNS2 00 of 4 0.46None
Larval Salivary gland4 00 of 4 0.83None
Larval midgut3 10 of 4 0.61None
Larval tubule6 01 of 4 1.20None
Larval hindgut36 64 of 4 6.82Up
Larval fat body4 10 of 4 0.90None
Larval trachea12 34 of 4 2.37Up
Larval carcass73 194 of 413.79Up
S2 cells (growing)0 00 of 4 0.11None
Whole fly5 21 of 4

Looking for FBgn0036481. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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