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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036484 through 18771 annotations produced 1 hits



(CG6859):

Annotation Number : CG6859
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036484
Gbrowse : chr3L:15137443-15139149 (+) // 100.0 //
Probeset : 1638822_at
Accessions : protein= NP_648753;, nucleotide= NM_140496;
Pathway : 0005779 // integral to peroxisomal membrane // inferred from electronic annotation
FlyMine data for FBgn0036484.
BDGP gene expression has embryonic in situ data for CG6859: 4 pix of staining in 1 body parts.
Homophila reports that CG6859 is a close match (2e-47) to human gene PEX3 (NP_003621), a gene associated with Zellweger syndrome, complementation group G, 214100 (3).
VDRC has 3 RNAi stocks for FBgn0036484 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain120 ± 34 of 4 0.70Down
Head118 ± 54 of 4 0.70Down
Eye117 ± 94 of 4 0.68Down
Thoracicoabdominal ganglion97 ± 94 of 4 0.60Down
Salivary gland130 ± 124 of 4 0.75Down
Crop383 ± 64 of 4 2.20Up
Midgut212 ± 94 of 4 1.20Up
Tubule151 ± 44 of 4 0.90Down
Hindgut210 ± 54 of 4 1.20Up
Heart162 ± 64 of 4 0.93None
Fat body189 ± 284 of 4 1.09None
Ovary242 ± 84 of 4 1.40Up
Testis428 ± 94 of 4 2.50Up
Male accessory glands88 ± 34 of 4 0.50Down
Virgin spermatheca147 ± 54 of 4 0.85Down
Mated spermatheca149 ± 124 of 4 0.86None
Adult carcass146 ± 94 of 4 0.80Down
Larval CNS161 ± 84 of 4 0.93None
Larval Salivary gland176 ± 174 of 4 1.01None
Larval midgut139 ± 34 of 4 0.80Down
Larval tubule255 ± 164 of 4 1.50Up
Larval hindgut91 ± 44 of 4 0.53Down
Larval fat body205 ± 424 of 4 1.20None
Larval trachea129 ± 144 of 4 0.74Down
Larval carcass78 ± 94 of 4 0.45Down
S2 cells (growing)174 ± 24 of 4 1.00None
Whole fly174 ± 44 of 4

Looking for FBgn0036484. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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