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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036493 through 18771 annotations produced 1 hits



(CG7255):

Annotation Number : CG7255
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036493
Gbrowse : chr3L:15297468-15303489 (+) // 100.0 //
Probeset : 1627578_s_at
Accessions : protein= NP_001034016; /// NP_001036607; /// NP_001036608; /// NP_996088;, nucleotide= NM_001038927; /// NM_001043142; /// NM_001043143; /// NM_206366;
Pathway : via spliceosome // inferred by curator /// 0003333 // amino acid transmembrane transport // inferred from sequence or s
Interpro : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0036493.
VDRC has 2 RNAi stocks for FBgn0036493 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 10 of 4 0.50Down
Head12 ± 10 of 4 0.60Down
Eye13 ± 01 of 4 0.63None
Thoracicoabdominal ganglion11 ± 01 of 4 0.50Down
Salivary gland244 ± 164 of 411.52Up
Crop14 ± 21 of 4 0.70None
Midgut77 ± 64 of 4 3.70Up
Tubule97 ± 134 of 4 4.60Up
Hindgut67 ± 44 of 4 3.20Up
Heart10 ± 13 of 4 0.52Down
Fat body16 ± 23 of 4 0.80None
Ovary11 ± 13 of 4 0.50Down
Testis12 ± 04 of 4 0.60Down
Male accessory glands109 ± 104 of 4 5.10Up
Virgin spermatheca19 ± 22 of 4 0.92None
Mated spermatheca23 ± 24 of 4 1.10None
Adult carcass21 ± 31 of 4 1.00None
Larval CNS11 ± 33 of 4 0.52Down
Larval Salivary gland15 ± 12 of 4 0.75None
Larval midgut31 ± 24 of 4 1.50Up
Larval tubule80 ± 24 of 4 3.80Up
Larval hindgut46 ± 34 of 4 2.16Up
Larval fat body63 ± 64 of 4 3.00Up
Larval trachea19 ± 52 of 4 0.93None
Larval carcass28 ± 44 of 4 1.36None
S2 cells (growing)73 ± 54 of 4 3.48Up
Whole fly21 ± 24 of 4

Looking for FBgn0036493. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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