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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036494 through 18771 annotations produced 1 hits



Toll-6 (Toll-6):

Annotation Number : CG7250
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036494
Gbrowse : chr3L:15329799-15335311 (+) // 100.0 //
Probeset : 1624790_at
Accessions : protein= NP_524081;, nucleotide= NM_079357;
Pathway : 0005886 // plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotat
Interpro : 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor
FlyMine data for FBgn0036494.
BDGP gene expression has embryonic in situ data for Toll-6: 31 pix of staining in 17 body parts.
Homophila reports that CG7250 is a close match (4e-12) to human gene TLR1;TIL (NP_003254), a gene associated with {Leprosy, protection against}, 246300 (3).
BioGrid reports that CG7250 interacts with CG7856 .
VDRC has 6 RNAi stocks for FBgn0036494 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain62 74 of 413.10Up
Head4 11 of 4 1.00None
Eye3 00 of 4 0.83None
Thoracicoabdominal ganglion36 24 of 4 7.80Up
Salivary gland5 30 of 4 1.11None
Crop4 20 of 4 0.90None
Midgut0 00 of 4 0.20None
Tubule1 00 of 4 0.30Down
Hindgut0 00 of 4 0.10None
Heart1 00 of 4 0.23None
Fat body5 11 of 4 1.10None
Ovary1 00 of 4 0.30None
Testis2 00 of 4 0.40None
Male accessory glands3 20 of 4 0.70None
Virgin spermatheca5 10 of 4 1.11None
Mated spermatheca3 10 of 4 0.75None
Adult carcass1 00 of 4 0.20None
Larval CNS28 54 of 4 6.07Up
Larval Salivary gland0 00 of 4 0.19None
Larval midgut4 10 of 4 0.89None
Larval tubule2 11 of 4 0.60None
Larval hindgut1 00 of 4 0.29None
Larval fat body2 10 of 4 0.40None
Larval trachea2 10 of 4 0.49None
Larval carcass0 00 of 4 0.19None
S2 cells (growing)0 00 of 4 0.15None
Whole fly4 10 of 4

Looking for FBgn0036494. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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