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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036495 through 18771 annotations produced 1 hits


(CG33259):

Annotation Number : CG33259
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036495
Gbrowse : chr3L:15400948-15401331 (+) // 100.0 //
Probeset : 1635492_at
Accessions : protein= NP_996090;, nucleotide= NM_206368;
FlyMine data for FBgn0036495.
VDRC has 2 RNAi stocks for FBgn0036495 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.10Down
Eye1 ± 00 of 4 0.04Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland3 ± 10 of 4 0.12Down
Crop2 ± 10 of 4 0.10Down
Midgut0 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.10Down
Hindgut2 ± 10 of 4 0.10Down
Heart0 ± 00 of 4 0.02Down
Fat body2 ± 20 of 4 0.07Down
Ovary1 ± 00 of 4 0.00Down
Testis13 ± 14 of 4 0.50Down
Male accessory glands3137 ± 1264 of 4112.10Up
Virgin spermatheca3 ± 10 of 4 0.11Down
Mated spermatheca1 ± 00 of 4 0.06Down
Adult carcass6 ± 20 of 4 0.20Down
Larval CNS1 ± 10 of 4 0.05Down
Larval Salivary gland1 ± 00 of 4 0.05Down
Larval midgut1 ± 00 of 4 0.04Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.06Down
Larval fat body3 ± 20 of 4 0.10Down
Larval trachea1 ± 10 of 4 0.05Down
Larval carcass1 ± 00 of 4 0.04Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly28 ± 34 of 4

Looking for FBgn0036495. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime