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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036498 through 18771 annotations produced 1 hits



(CG13455):

Annotation Number : CG13455
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036498
Gbrowse : chr3L:15486841-15491156 (+) // 100.0 //
Probeset : 1623128_at
Accessions : protein= NP_648765;, nucleotide= NM_140508;
FlyMine data for FBgn0036498.
BDGP gene expression has embryonic in situ data for CG13455: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0036498 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 11 of 4 0.30Down
Head6 21 of 4 0.30Down
Eye2 00 of 4 0.10Down
Thoracicoabdominal ganglion10 12 of 4 0.50Down
Salivary gland2 10 of 4 0.12Down
Crop3 00 of 4 0.20Down
Midgut2 00 of 4 0.10Down
Tubule12 00 of 4 0.50Down
Hindgut3 10 of 4 0.20Down
Heart2 00 of 4 0.10Down
Fat body9 41 of 4 0.40Down
Ovary0 00 of 4 0.00Down
Testis411 104 of 418.00Up
Male accessory glands4 10 of 4 0.20Down
Virgin spermatheca6 03 of 4 0.30Down
Mated spermatheca7 23 of 4 0.34Down
Adult carcass7 10 of 4 0.30Down
Larval CNS3 20 of 4 0.16Down
Larval Salivary gland3 10 of 4 0.13Down
Larval midgut6 00 of 4 0.28Down
Larval tubule3 10 of 4 0.20Down
Larval hindgut1 00 of 4 0.08Down
Larval fat body75 353 of 4 3.30None
Larval trachea3 30 of 4 0.17Down
Larval carcass2 00 of 4 0.11Down
S2 cells (growing)1 00 of 4 0.05Down
Whole fly22 33 of 4

Looking for FBgn0036498. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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