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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036501 through 18771 annotations produced 1 hits



(CG7272):

Annotation Number : CG7272
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036501
Gbrowse : chr3L:15494039-15496877 (+) // 100.0 //
Probeset : 1634684_at
Accessions : protein= NP_648768;, nucleotide= NM_140511;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0036501.
BDGP gene expression has embryonic in situ data for CG7272: 6 pix of staining in 5 body parts.
VDRC has 2 RNAi stocks for FBgn0036501 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain185 ± 104 of 4 1.60Up
Head487 ± 184 of 4 4.20Up
Eye144 ± 64 of 4 1.24None
Thoracicoabdominal ganglion254 ± 114 of 4 2.20Up
Salivary gland97 ± 74 of 4 0.83None
Crop178 ± 84 of 4 1.50Up
Midgut524 ± 164 of 4 4.50Up
Tubule2147 ± 954 of 418.30Up
Hindgut256 ± 124 of 4 2.20Up
Heart221 ± 84 of 4 1.89Up
Fat body173 ± 74 of 4 1.48Up
Ovary15 ± 13 of 4 0.10Down
Testis34 ± 14 of 4 0.30Down
Male accessory glands11 ± 10 of 4 0.10Down
Virgin spermatheca149 ± 84 of 4 1.28None
Mated spermatheca154 ± 174 of 4 1.32None
Adult carcass350 ± 84 of 4 3.00Up
Larval CNS68 ± 64 of 4 0.58Down
Larval Salivary gland283 ± 514 of 4 2.42Up
Larval midgut299 ± 284 of 4 2.56Up
Larval tubule1636 ± 444 of 414.00Up
Larval hindgut171 ± 154 of 4 1.46Up
Larval fat body95 ± 104 of 4 0.80None
Larval trachea298 ± 374 of 4 2.55Up
Larval carcass279 ± 184 of 4 2.39Up
S2 cells (growing)323 ± 124 of 4 2.77Up
Whole fly117 ± 104 of 4

Looking for FBgn0036501. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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