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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036503 through 18771 annotations produced 1 hits


Annotation Number : CG13454
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036503
Gbrowse : chr3L:15509787-15510126 (-) // 100.0 //
Probeset : 1629829_at
Accessions : protein= NP_648771;, nucleotide= NM_140514;
FlyMine data for FBgn0036503.
BDGP gene expression has embryonic in situ data for CG13454: 13 pix of staining in 2 body parts.
BioGrid reports that CG13454 interacts with CG8322 .
VDRC has 3 RNAi stocks for FBgn0036503 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.10None
Head1 00 of 4 0.30None
Eye1 00 of 4 0.33None
Thoracicoabdominal ganglion4 00 of 4 1.00None
Salivary gland1 00 of 4 0.26None
Crop3 00 of 4 0.90None
Midgut5 20 of 4 1.30None
Tubule3 00 of 4 0.80None
Hindgut3 10 of 4 0.90None
Heart3 10 of 4 0.90None
Fat body1 10 of 4 0.35None
Ovary2 00 of 4 0.60None
Testis2 00 of 4 0.50None
Male accessory glands4 10 of 4 1.10None
Virgin spermatheca1 00 of 4 0.30None
Mated spermatheca1 00 of 4 0.28None
Adult carcass5 10 of 4 1.20None
Larval CNS2 11 of 4 0.61None
Larval Salivary gland2 10 of 4 0.51None
Larval midgut7 10 of 4 1.66None
Larval tubule5 00 of 4 1.30None
Larval hindgut2 00 of 4 0.60None
Larval fat body2 00 of 4 0.50None
Larval trachea2 20 of 4 0.64None
Larval carcass0 00 of 4 0.21None
S2 cells (growing)2 00 of 4 0.62None
Whole fly4 10 of 4

Looking for FBgn0036503. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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