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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036511 through 18771 annotations produced 1 hits



(CG6498):

Annotation Number : CG6498
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036511
Gbrowse : chr3L:15559147-15568853 (+) // 100.0 //
Probeset : 1630573_at
Accessions : protein= NP_648778;, nucleotide= NM_140521;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred fr
FlyMine data for FBgn0036511.
Homophila reports that CG6498 is a close match (4e-11) to human gene CDS1;CHEK2;CHK2;LFS2;RAD53 (NP_665861), a gene associated with Li-Fraumeni syndrome, 609265 (3);Osteosarcoma, somatic, 259500 (3);Prostate cancer, familial, 176807 (3);{Breast and colorectal cancer, susceptibility to} (3);{Breast cancer, susceptibility to}, 114480 (3).
TRiP has 2 RNAi stocks for FBgn0036511 available for purchase.
VDRC has 3 RNAi stocks for FBgn0036511 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain194 ± 64 of 4 3.00Up
Head85 ± 74 of 4 1.30None
Eye50 ± 44 of 4 0.77None
Thoracicoabdominal ganglion185 ± 54 of 4 2.80Up
Salivary gland70 ± 44 of 4 1.07None
Crop82 ± 74 of 4 1.30None
Midgut40 ± 41 of 4 0.60Down
Tubule61 ± 103 of 4 0.90None
Hindgut142 ± 34 of 4 2.20Up
Heart54 ± 24 of 4 0.82None
Fat body47 ± 143 of 4 0.72None
Ovary92 ± 44 of 4 1.40Up
Testis67 ± 84 of 4 1.00None
Male accessory glands35 ± 43 of 4 0.50Down
Virgin spermatheca22 ± 32 of 4 0.35Down
Mated spermatheca20 ± 20 of 4 0.32Down
Adult carcass77 ± 54 of 4 1.20None
Larval CNS72 ± 64 of 4 1.10None
Larval Salivary gland60 ± 54 of 4 0.92None
Larval midgut40 ± 53 of 4 0.61Down
Larval tubule197 ± 164 of 4 3.00Up
Larval hindgut60 ± 14 of 4 0.92None
Larval fat body78 ± 44 of 4 1.20None
Larval trachea41 ± 74 of 4 0.62Down
Larval carcass65 ± 64 of 4 1.00None
S2 cells (growing)104 ± 74 of 4 1.58Up
Whole fly65 ± 74 of 4

Looking for FBgn0036511. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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