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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036512 through 18771 annotations produced 1 hits



(CG16979):

Annotation Number : CG16979
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036512
Gbrowse : chr3L:15569665-15571775 (+) // 100.0 //
Probeset : 1634501_at
Accessions : protein= NP_648779;, nucleotide= NM_140522;
Interpro : 0008233 // peptidase activity // inferred from electronic annotation /// 0008234 // cysteine-type peptidase activity //
FlyMine data for FBgn0036512.
BDGP gene expression has embryonic in situ data for CG16979: 6 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0036512 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain108 ± 34 of 4 0.70Down
Head96 ± 74 of 4 0.60Down
Eye67 ± 54 of 4 0.44Down
Thoracicoabdominal ganglion125 ± 14 of 4 0.80Down
Salivary gland279 ± 144 of 4 1.80Up
Crop166 ± 44 of 4 1.10None
Midgut116 ± 44 of 4 0.80Down
Tubule120 ± 114 of 4 0.80Down
Hindgut115 ± 54 of 4 0.70Down
Heart119 ± 74 of 4 0.77Down
Fat body119 ± 224 of 4 0.77Down
Ovary121 ± 14 of 4 0.80Down
Testis865 ± 84 of 4 5.60Up
Male accessory glands176 ± 84 of 4 1.10None
Virgin spermatheca131 ± 74 of 4 0.85None
Mated spermatheca169 ± 124 of 4 1.09None
Adult carcass111 ± 34 of 4 0.70Down
Larval CNS155 ± 74 of 4 1.00None
Larval Salivary gland357 ± 414 of 4 2.30Up
Larval midgut110 ± 44 of 4 0.71Down
Larval tubule95 ± 44 of 4 0.60Down
Larval hindgut139 ± 24 of 4 0.90None
Larval fat body167 ± 394 of 4 1.10None
Larval trachea149 ± 84 of 4 0.96None
Larval carcass142 ± 54 of 4 0.92None
S2 cells (growing)175 ± 34 of 4 1.13None
Whole fly155 ± 74 of 4

Looking for FBgn0036512. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime