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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036515 through 18771 annotations produced 1 hits



(CG12304):

Annotation Number : CG12304
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036515
Gbrowse : chr3L:15576742-15578444 (+) // 100.0 //
Probeset : 1629188_at
Accessions : protein= NP_648782; /// NP_996097;, nucleotide= NM_140525; /// NM_206375;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotatio
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036515.
BioGrid reports that CG12304 interacts with CG17564 CG3821 CG9213 CG8291 .
VDRC has 3 RNAi stocks for FBgn0036515 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain298 ± 64 of 4 0.60Down
Head346 ± 234 of 4 0.70Down
Eye444 ± 104 of 4 0.93None
Thoracicoabdominal ganglion283 ± 94 of 4 0.60Down
Salivary gland397 ± 64 of 4 0.84None
Crop382 ± 44 of 4 0.80Down
Midgut425 ± 194 of 4 0.90None
Tubule308 ± 254 of 4 0.60Down
Hindgut379 ± 94 of 4 0.80Down
Heart322 ± 204 of 4 0.68Down
Fat body291 ± 264 of 4 0.61Down
Ovary582 ± 44 of 4 1.20Up
Testis278 ± 54 of 4 0.60Down
Male accessory glands605 ± 94 of 4 1.30Up
Virgin spermatheca329 ± 124 of 4 0.69Down
Mated spermatheca439 ± 234 of 4 0.92None
Adult carcass289 ± 24 of 4 0.60Down
Larval CNS485 ± 324 of 4 1.02None
Larval Salivary gland837 ± 394 of 4 1.76Up
Larval midgut353 ± 164 of 4 0.74Down
Larval tubule252 ± 74 of 4 0.50Down
Larval hindgut412 ± 104 of 4 0.87None
Larval fat body338 ± 204 of 4 0.70Down
Larval trachea734 ± 834 of 4 1.54Up
Larval carcass632 ± 354 of 4 1.33Up
S2 cells (growing)446 ± 44 of 4 0.94None
Whole fly476 ± 264 of 4

Looking for FBgn0036515. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime