Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036518 through 18771 annotations produced 3 hits



():

Annotation Number : CG32149
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036518
Gbrowse : chr3L:15581979-15602142 (+) // 99.64 //
Probeset : 1626178_s_at
Accessions : protein= , nucleotide=
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0004427 // inorganic diphosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity //
FlyMine data for FBgn0036518.
BDGP gene expression has embryonic in situ data for RhoGAP71E: 15 pix of staining in 17 body parts.
TRiP has 1 RNAi stocks for FBgn0036518 available for purchase.
VDRC has 3 RNAi stocks for FBgn0036518 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain372 ± 84 of 4 3.50Up
Head161 ± 134 of 4 1.50Up
Eye159 ± 104 of 4 1.51Up
Thoracicoabdominal ganglion300 ± 34 of 4 2.80Up
Salivary gland134 ± 94 of 4 1.27None
Crop448 ± 244 of 4 4.20Up
Midgut80 ± 34 of 4 0.80None
Tubule51 ± 34 of 4 0.50Down
Hindgut173 ± 54 of 4 1.60Up
Heart113 ± 104 of 4 1.07None
Fat body203 ± 324 of 4 1.93Up
Ovary161 ± 74 of 4 1.50Up
Testis42 ± 24 of 4 0.40Down
Male accessory glands109 ± 14 of 4 1.00None
Virgin spermatheca290 ± 234 of 4 2.75Up
Mated spermatheca367 ± 344 of 4 3.47Up
Adult carcass118 ± 34 of 4 1.10None
Larval CNS594 ± 564 of 4 5.62Up
Larval Salivary gland128 ± 44 of 4 1.21None
Larval midgut89 ± 34 of 4 0.84None
Larval tubule125 ± 34 of 4 1.20None
Larval hindgut198 ± 54 of 4 1.87Up
Larval fat body98 ± 84 of 4 0.90None
Larval trachea149 ± 74 of 4 1.42Up
Larval carcass134 ± 54 of 4 1.27Up
S2 cells (growing)621 ± 364 of 4 5.88Up
Whole fly105 ± 94 of 4



RhoGAP71E (RhoGAP71E):

Annotation Number : CG32149
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036518
Gbrowse : chr3L:15581979-15596237 (+) // 100.0 //
Probeset : 1637051_at
Accessions : protein= NP_001137956; /// NP_648784; /// NP_730060; /// NP_730061;, nucleotide= NM_001144484; /// NM_140527; /// NM_168629; /// NM_168630;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0004427 // inorganic diphosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity //
FlyMine data for FBgn0036518.
BDGP gene expression has embryonic in situ data for RhoGAP71E: 15 pix of staining in 17 body parts.
TRiP has 1 RNAi stocks for FBgn0036518 available for purchase.
VDRC has 3 RNAi stocks for FBgn0036518 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain39 ± 34 of 4 2.20Up
Head3 ± 12 of 4 0.20Down
Eye9 ± 04 of 4 0.51Down
Thoracicoabdominal ganglion19 ± 24 of 4 1.10None
Salivary gland13 ± 22 of 4 0.72None
Crop27 ± 34 of 4 1.50None
Midgut12 ± 22 of 4 0.70None
Tubule10 ± 12 of 4 0.60Down
Hindgut15 ± 24 of 4 0.90None
Heart12 ± 14 of 4 0.69None
Fat body18 ± 54 of 4 1.01None
Ovary54 ± 24 of 4 3.00Up
Testis20 ± 34 of 4 1.10None
Male accessory glands10 ± 31 of 4 0.60None
Virgin spermatheca15 ± 14 of 4 0.86None
Mated spermatheca16 ± 52 of 4 0.93None
Adult carcass12 ± 30 of 4 0.70None
Larval CNS61 ± 74 of 4 3.39Up
Larval Salivary gland9 ± 21 of 4 0.51Down
Larval midgut6 ± 10 of 4 0.34Down
Larval tubule14 ± 14 of 4 0.80None
Larval hindgut6 ± 01 of 4 0.37Down
Larval fat body13 ± 31 of 4 0.70None
Larval trachea10 ± 24 of 4 0.59Down
Larval carcass5 ± 10 of 4 0.30Down
S2 cells (growing)229 ± 64 of 412.79Up
Whole fly18 ± 24 of 4



RhoGAP71E (RhoGAP71E):

Annotation Number : CG32149
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036518
Gbrowse : chr3L:15581979-15596172 (+) // 100.0 //
Probeset : 1640295_a_at
Accessions : protein= NP_001137956; /// NP_648784; /// NP_730060; /// NP_730061;, nucleotide= NM_001144484; /// NM_140527; /// NM_168629; /// NM_168630;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0004427 // inorganic diphosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity //
FlyMine data for FBgn0036518.
BDGP gene expression has embryonic in situ data for RhoGAP71E: 15 pix of staining in 17 body parts.
TRiP has 1 RNAi stocks for FBgn0036518 available for purchase.
VDRC has 3 RNAi stocks for FBgn0036518 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain88 ± 64 of 4 1.10None
Head13 ± 04 of 4 0.20Down
Eye18 ± 24 of 4 0.23Down
Thoracicoabdominal ganglion49 ± 74 of 4 0.60Down
Salivary gland27 ± 33 of 4 0.34Down
Crop53 ± 14 of 4 0.70Down
Midgut30 ± 24 of 4 0.40Down
Tubule19 ± 04 of 4 0.20Down
Hindgut33 ± 24 of 4 0.40Down
Heart20 ± 34 of 4 0.26Down
Fat body37 ± 84 of 4 0.46Down
Ovary211 ± 94 of 4 2.60Up
Testis19 ± 24 of 4 0.20Down
Male accessory glands21 ± 14 of 4 0.30Down
Virgin spermatheca39 ± 24 of 4 0.49Down
Mated spermatheca51 ± 44 of 4 0.64Down
Adult carcass23 ± 04 of 4 0.30Down
Larval CNS90 ± 124 of 4 1.12None
Larval Salivary gland26 ± 24 of 4 0.33Down
Larval midgut14 ± 34 of 4 0.18Down
Larval tubule38 ± 34 of 4 0.50Down
Larval hindgut16 ± 14 of 4 0.20Down
Larval fat body24 ± 24 of 4 0.30Down
Larval trachea24 ± 64 of 4 0.31Down
Larval carcass15 ± 14 of 4 0.19Down
S2 cells (growing)322 ± 144 of 4 4.00Up
Whole fly80 ± 14 of 4

Looking for FBgn0036518. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime