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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036520 through 18771 annotations produced 1 hits



(CG13449):

Annotation Number : CG13449
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036520
Gbrowse : chr3L:15603730-15605631 (-) // 99.76 //
Probeset : 1637521_at
Accessions : protein= NP_648787;, nucleotide= NM_140530;
FlyMine data for FBgn0036520.
VDRC has 3 RNAi stocks for FBgn0036520 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 11 of 4 0.10Down
Head8 20 of 4 0.10Down
Eye6 11 of 4 0.11Down
Thoracicoabdominal ganglion4 10 of 4 0.10Down
Salivary gland17 41 of 4 0.28Down
Crop15 23 of 4 0.20Down
Midgut12 12 of 4 0.20Down
Tubule22 23 of 4 0.40Down
Hindgut52 14 of 4 0.80None
Heart2 00 of 4 0.04Down
Fat body4 20 of 4 0.07Down
Ovary1 00 of 4 0.00Down
Testis707 264 of 411.10Up
Male accessory glands17 00 of 4 0.30Down
Virgin spermatheca6 20 of 4 0.11Down
Mated spermatheca6 10 of 4 0.11Down
Adult carcass9 40 of 4 0.20Down
Larval CNS5 21 of 4 0.09Down
Larval Salivary gland7 20 of 4 0.11Down
Larval midgut3 10 of 4 0.05Down
Larval tubule32 14 of 4 0.50Down
Larval hindgut39 24 of 4 0.61Down
Larval fat body81 343 of 4 1.30None
Larval trachea4 51 of 4 0.08Down
Larval carcass7 00 of 4 0.12Down
S2 cells (growing)5 00 of 4 0.09Down
Whole fly63 44 of 4

Looking for FBgn0036520. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime